DreINT0074382 @ danRer10
Intron Retention
Gene
ENSDARG00000103200 | gpr107
Description
G protein-coupled receptor 107 [Source:ZFIN;Acc:ZDB-GENE-061103-130]
Coordinates
chr5:31870526-31871602:-
Coord C1 exon
chr5:31871519-31871602
Coord A exon
chr5:31870648-31871518
Coord C2 exon
chr5:31870526-31870647
Length
871 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTTTATTGTCTGTTGATAGTTG
3' ss Score
7.4
Exon sequences
Seq C1 exon
ATTGTATGCTATATTTATTTCACCCGCATCATTGCCAGTCTCATCAAGGTCATTGTTCCTTTCCAGTGGAAGTGGCTTTACCAG
Seq A exon
GTGAGTGACATACAGAAAAGACCTGTTTTATAAGCATGAATATACTGTACCTATCAATCTCTTCAGATAGAAAATAATTACGCTCTATTGGTAACGTATAACTGTTTTACAATGAAACCGAGGCTGAAAACGTGACATTTGCTTTTTTCTACCAACTGATGTCCGGTTTAGTTCTCTTTTTACGAGTCCACCTGCATCTGAATTGGCCAGTGTTCTTGTACCATGAAGGAAAAACTTTTTTAAAATTGTGTATTAGGCCAATTGTGTATTTATTTTTTCTTATTTATTTTTTTTTTCCAGTAGTTCACTTCATAAATAAAGCCTTGAGCAGACTAGTAACATGCTCTAGTAAGCATGCTTAAATATGCTCTTGTAAGAGTCATAGATTTATTTTGTAGCTAAATGTAGCAGTCTTCATACTCTGGATAACAAATTACCTTTTCAAGTGTGTACACTTTCGTGTTGTCCCGGGAGAGAACCCTGAGCTCGGAGATAATTGATCCCAGGTCTCCCACCTGGTCAATGAGCATACTGTATATGGGAGTACAGGATTGGCTAGTTTTCGAGAACTCCCCCTGATGAAAAGGGGGAGATGAGGTGGAAGGGGGATTGTTCAAAAATGAAAATAAAATGTAATGCTAGATGGGCTGTTTATAGTGAGTTTGGAATAATCTTATTGGCTTACTATTGATTACGCGTAAAAGACTAGCTGCGATCAATCATATCACATGCTCCTCGAAATTAGATTGTGAAACTTCACATGCTAAACAATTATAGACATTTTTTTTTACATAAAAATAGATTAATTGCTCATATACCAAAGGTGCAAACATGCAAGTTAAATGTTTGTGTTTTTATTGTCTGTTGATAG
Seq C2 exon
TTGATGAATGAGCTGGCCACTCTGACCTTCTTCTTCTTAACTGGACACAAGTTCCGGCCAGCCTCCTACAACCCTTACCTGCTGTTGTCTGTGGAGGATGAAGACATGGAGATGGACGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103200:ENSDART00000168870:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(9.1=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=PD(8.1=58.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTATATTTATTTCACCCGCATCA
R:
ACATCGTCCATCTCCATGTCT
Band lengths:
200-1071
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]