GgaINT0124998 @ galGal3
Intron Retention
Gene
ENSGALG00000004052 | GPR107
Description
NA
Coordinates
chr17:6433163-6433613:+
Coord C1 exon
chr17:6433163-6433209
Coord A exon
chr17:6433210-6433488
Coord C2 exon
chr17:6433489-6433613
Length
279 bp
Sequences
Splice sites
5' ss Seq
CAGGTTATG
5' ss Score
2.37
3' ss Seq
CAATCTTGTCTTACTTGCAGCTG
3' ss Score
8.95
Exon sequences
Seq C1 exon
GTAGTCTTTGGAATATATTAACTGTTGAAGATACCAAACAACTTCAG
Seq A exon
GTTATGTTTTTTTTTTCCTTGGCTTTTAAGTCTTGCTGAACATCACTGGAGTGATGTCTAGAGTTGTAACTGGATTTAAAGTGATGGGGAAATTTGAAAGAACAAAGAGCTTGACAGCCTTTAGCCTGGGATTAATGATAACAGGATAGAAATTGCTTTTTTATTTCTGCTATGACACAGGCTTCTTGGCCATTCAATCTTGAACCTTATGAATGAGGAGAAGTGTTTTATGACCGTGAAGAATTACAGGACTGAATTTCAATCTTGTCTTACTTGCAG
Seq C2 exon
CTGCTGAATGAAATGGCCACGCTGGTGTTCTTTGTCCTCACTGGGTACAAATTCCGTCCAGCATCGGATAACCCTTACCTGCAGCTTTCTCAAGATGATGAGGATGATTTGGAGATGGAAGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004052:ENSGALT00000006449:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(5.1=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=PD(8.2=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTTGAAGATACCAAACAACTTCA
R:
ACAGCTTCCATCTCCAAATCATCC
Band lengths:
152-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]