RnoINT0066898 @ rn6
Intron Retention
Gene
ENSRNOG00000023589 | Gpr107
Description
G protein-coupled receptor 107 [Source:RGD Symbol;Acc:1305882]
Coordinates
chr3:10638882-10640572:-
Coord C1 exon
chr3:10640489-10640572
Coord A exon
chr3:10639004-10640488
Coord C2 exon
chr3:10638882-10639003
Length
1485 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
3' ss Seq
GGTGGATTTTAAATTTGCAGCTG
3' ss Score
5.14
Exon sequences
Seq C1 exon
ATCGTGTGCTACATCTACTTCACCAGGATCATCGCCTTTCTTCTCAAGTTCGCTGTTCCCTTCCAGTGGAAGTGGCTCTACCAG
Seq A exon
GTCTGCCGTTCTCGGGGGACAGTTTGGAGGGTTTATGTCTGAGGGTCATGCCTTGGGGTATAGCTTAAGATGGTGTCTGACCTGCCTGGGAATGACTGCTACGACCTCCATCTCCTCTGCTCTCCAGATACGATGATCTGTGTGCCCAGAGCTGCTGGGCTACTTGATAAATCTGGATGTAATTGCGTTATTGATTAATTCTAAGTCTTTGAAGAGAAAAGCCTCAAGCAGAGAGAGTGAGATTTGTCCTGTGTAATTAGAATTTATCCACCTTTGCCTTCAGCCAAAGAGCTTGATGGTTTTCAATCTAGTCCTTGCTTTAAGGATTTGTTTTTGTTTTTATTTTTGGGGTTTTGGACCCAAAATTTATTTTTATATATATTCTATATATATAAAATACTAAGATACTAGAGCTGGTCACCAAGGCTGCATATATATTCTGACCTTTGTTCTTGTGGCTAGAAAGATGACTCTAAGGACACTTGCTGTTCTACCAGAGGACTAGAGTTTAGTTTCCCGCAGCAGTGTGGGGTGGGTGACTCACAATGCCACATGAGTCCAGCTCCAGGGGAGCCAACGCCCTATTCTGGCCTGTGCAGTCACTGGCATCCAAGTGTTCAAACACAGACGAACACACTTACACATAAATAAAGAATAAAGTAACAGTCTTTTTTTTATAGGCAGGATTCATTTACTGGAGTCCCTACCTACCCTGTGACTCTTGTTCTTGGCTGAGAGATGGCTCAGCTGGTAGAGGCGCCTGACACCAGCACTGGTGACCTGAGGTGGCCCCTTAGGACCCACATGCTGGAAGGAGAATTGCACTCCCATAAGTTAGTTGTCCTCTGACCTCCACATTCAACTCCACGGTGTACACAACACACACACACACACACACACACACACACACACACACCATAAGTTAGTTGTCCTCTGACCTCCACATTCAACTCCACGGTGTACACAACACACACACACACACACACACACACACACATACACACACACCCCAGTAGAATGGAGAAGGTACAAAGTGAGTAAGTGTGATGGCACACACTACTGTCCAGCATTTGGGAAGCTGACACAGAGGTGGTGAGTTCAAGGCCAGCCTAGGTTTCACAGCAAGACGTTCTCATCATTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCGAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCGTTCTCATCATTTTTAAAAAAAAGAGTGGGTTCCCCTGGAGAAGCTCGGTGTCTCCTCTGGCCTTGCTCTTGGCGTAGATCCCCGCAGACCTGAGGAAGTGCTCAGGAGCAGATGCCTGCAGCCTGGTGGAAAACGGCGTGGAGACCAGGAGAGGCAAGAGCTTGTTTACTTCTGTTGCTTTCTGAAGAGAGGCGTTGCTAATCCTTTTATTTGTGGGTGGATTTTAAATTTGCAG
Seq C2 exon
CTGCTGGATGAAACAGCCACACTGGTGTTCTTTGTCCTGACGGGGTATAAATTTCGCCCAGCTTCAGATAACCCCTACCTGCAGCTCTCTCAGGAAGAAGATGACCTGGAGATGGAGTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023589:ENSRNOT00000037742:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(9.2=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=PD(8.2=58.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGTGTGCTACATCTACTTCACC
R:
ACAGACTCCATCTCCAGGTCA
Band lengths:
206-1691
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]