HsaINT0077707 @ hg19
Intron Retention
Gene
ENSG00000132196 | HSD17B7
Description
hydroxysteroid (17-beta) dehydrogenase 7 [Source:HGNC Symbol;Acc:5215]
Coordinates
chr1:162766375-162767706:+
Coord C1 exon
chr1:162766375-162766467
Coord A exon
chr1:162766468-162767591
Coord C2 exon
chr1:162767592-162767706
Length
1124 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
ATTATCTTCTGCTGTTTCAGAAA
3' ss Score
8.95
Exon sequences
Seq C1 exon
GTTTCAGAGATTAGACTGTATATATCTAAATGCTGGGATCATGCCTAATCCACAACTAAATATCAAAGCACTTTTCTTTGGCCTCTTTTCAAG
Seq A exon
GTAATTTTCGTTTTATGGATGAACTGATTGGAAGGAATGTGTTCATTTTTCTGCCTAGTTTTGATGGCATGTTAAGTTGGGGGGATGAAAGGTAAGGGGTTGTTGAAAAGGTTGAAGACAGAAAAAGGAGATGTCGCAACCATATCATGAAAGAAAAGCAATCCTCTTTTGTGGGGAGTGCTGAAAGTCCCGTTTTTTATGGTATTCTAAGTCTCCAGGACATTCTAAATGGTTTAGAAGGTCATTTTTTGGTCTGCCTGGATATGCCTATTAGCAAGAACATTTTGAAATTAGGCAGAGTTCTCAGAGAGTCTCCAATTTCCAGGAAAGTTACTTTGAACTGTTTCCCAGCTGTATGTCAGGTGCTCTGACCAGTAGGTTGGGGAAATGCAGACAACTAATGTTTCCTGGGAGATTCTCGTTACTCATTAGTGTAGTGGCTTTCAAAAATGTTGAAACACAACCAGGAGAATTCTTATTTATAGGAATAGATCTTACTTTGTGACCCAATACACTTATTCATAAATAGGCATTCTTACTATGTGCTGCTTACTATACCAATGCTTTTGCTTTACTTCTTTTCCATTAAAAGACAGACACACACACACACTCTCACACTCTCTCTGTCTCTCTCTCCCCGCATTGATTTTGACCTACTAAATTGACCTCCCAGCAGAACACTATATTAATACGTTTGAAGTATTCCCAGTTAAAAAAACAATCTGTTTAACTCTTTTTTTTGACAGTTAAACATACTTTGTGCACAGGAAAACTTTTTTTCCCTTTGGCATAGCTTATTATTCCTTTAGAACAGTTTACCTGTAACCTGATTGGGAAAGAGGTGAAGAGAATTTTAGCAGCAGGTTTTTGAGAGACTCAAGTTCCTATTGGTAGCGTGAGCTATAAGTATGTAAGTATTTCTGTGAATTAGTGGGGGGAAGGAGGGTCTTTGGCATTTCATTTAATACAATAACCCAGTCTGAGAAATAGGTATTTTTATTCCTGTCATTATAGAATCAAGGGAGGTGTAGTTTATGGGTCGGGGGGATGGGTTGGAAAGTGTTTTCAGTATTTCCAGTTAAAGAAGCTTTAAAAAGTCATGCAATTATCTTCTGCTGTTTCAG
Seq C2 exon
AAAAGTGATTCATATGTTCTCCACAGCTGAAGGCCTGCTGACCCAGGGTGATAAGATCACTGCTGATGGACTTCAGGAGGTGTTTGAGACCAATGTCTTTGGCCATTTTATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132196-HSD17B7:NM_016371:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010620=adh_short=PD(24.3=78.1),PF0010620=adh_short=PU(1.0=3.1)
A:
NA
C2:
PF0010620=adh_short=FE(18.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTGTATATATCTAAATGCTGGGA
R:
CAGGATAAAATGGCCAAAGACAT
Band lengths:
196-1320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)