BtaINT0073532 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005976 | HSD17B7
Description
Bos taurus hydroxysteroid (17-beta) dehydrogenase 7 (HSD17B7), mRNA. [Source:RefSeq mRNA;Acc:NM_001083375]
Coordinates
chr3:6651688-6655590:-
Coord C1 exon
chr3:6655498-6655590
Coord A exon
chr3:6651803-6655497
Coord C2 exon
chr3:6651688-6651802
Length
3695 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
ATTGTCTTCTGCTGTTTCAGAAA
3' ss Score
9.15
Exon sequences
Seq C1 exon
GTTTCAGAGATTAGACTATGTATATCTAAATGCTGGGATCATGCCTAATCCACAGCTAAATATCAAAGCACTTTTCCGTGGTCTCTTTTCAAG
Seq A exon
GTAATTTCTATCTTCTAGATTAACTGATTGGAAGGAAGGTGTTTATTTATATATTTTTGCCTAGCTTTGCTGTCAGTCCATAAGTTGAGGGGGTGAGGGGGTGTGGAGAAGAATGAAGATAGAAAGTACATGTTGCAGCCATGTGGTGAAACGTGCTTTCGTCTTTGTGAGCAAAGTCATGATTCTGTGTTCTTGGTCCCCAGATATTCCAAGAATGTTACATGTTTTGGCAGGTCAGTTTTGGTCTGCCTCACTGTGTCCATTAGAACATTTCAGAACTAGGCAGAGTTGTCAGTGAGACTCTAATATCCAGGAAGGCAACTTGAGAAGCATTTCTCAGCCATGTGTCAGGCACTCTGACTAGTAGGCTGAGGAAATGTACAGGGCTAAATACCTTCCTGGGAGATTCTCAACACACATTCAGTCCAGTTCAGTCGCTCAGTCGTGTCCGACTCTTTGCGACCCCATGAATCACAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTCACTCAGATTCACACCAGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTTGCGTGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCGGTGCTCAGCTTTCTTCACAGTCCAACTTTCACATCCATACGTGACTACTGGGAAAACCATAGCCTTGACTAGACAGACCTTTGTTGGCAAACTAATGTCTCTGCTTTTCAATATGCTATCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCAGTCATCATCTGCAGTGATTTTGGAGCCCCAAAAAATAAAGTCTGACACTGTTTCCACTGTCTCCCCATCTATTTGCCATGAAGTAATGGGACCAGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCACTTTCATTTTCATCAAGAGGCTTTTTAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCCGAGGTTATTAATATTTCTCCTGGCAATCTTGATTCCAGCTTGTGTTTCTTCCAGCCCAGCGTTTCTCATGATGTACTCTGTATATAAGTTAAATGAGCAGGGTGACAATATACAGCCTTGACGTACTCCTTTTCCTATTTGGAACCAGTCTGTTCCACGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATATAGGTTTCTCAAGAGGCAGGTCAGGTGCTCTGGTATTCCCATCTCTTTCAGAATTTTCCACAGTTTATTGTGATCCACACAGTCAATACACATTAGTGGCTTCCAAAAATGTTTAACTACAACCTACAGTACTACTACTATTAGTAGTAGTACAGTAAGAAATAAATCTTTTTTGTGACCCAGTGTACTTATTCATGGATTTCCCAGGTGGCACAGTGGTAAAGAACCTGCCTTCCAGGCGACGTGGGTTCGATCCCTGGGTCAGGGAGTCCCTGGAGAAGGAAATGGCAACCAATCCATTCCCGTATTCTTGCCTGGAAAATTCAATGGACAGAGGAACCTGGCATGCTATAATCCACGGGGTGGCAAAGAGCCAGACACAACTGAGCAACTGAGCACATCCATACTTATTCATAAATAGATGTTACTCTTACTTCATGCTACTTCCTATACTGCTACTTTTGTTTTACTTTTCTGCCATTCAACACACACACACTCCTACACACAAAATCACATGCTGGTCTTGACCTATTACATTGATCTCACAGCAAATCACTGTCTTCCTGTATTCAATGCCTCAGGAATTCCCTATGATAAAAAAGCCTGCTTCACTTTGTTACTTTGTTCAGCAGTTAGACATCAGTGTGCAGGGGAAGACTTTTTCTTCTTGGCATGACTCTTATTCCCCCAGGGCAGTTGATTTGTATTAGGTTGGTGCAAAAGTATTGTGGTTTTGCATGGTTGAAATTTGCTATCTGATATTGGAATACATTCTTAAATAAATGTGGTTATGTTATACATTGTTTTAATGCACATTTCTCACTTTGTTTTTTGCTAATGACTTATTACTTCCTATGTATTTTATATTTTTTTTAGACTAGGAAATGATGTTAGACAAAAAGAAAATTCAAGTGATTTTCCTATTTGAGTTCAAAATTGTTCATAAGGCAGTGGAGACAACTTAGACCAACAACACATTTGGCCCAGGAACTGCTAACAAACATACAGTGCAGTGCTTGTTTGAGAAGTTTTGCAAAGAAGACGAGATCCTTGAAGATGGGGAACTCAGTGGCCAATGGTCAGATGACAGTGACCAACTGAGAACAATCACTGAAGCTGATCCTCTTACAACTGCATGAGAAGTTGCTGAAGAACTCAGTGTTGACCATTCTATGGTAGTTTGGCATTTGAAGCAGATCGGAAAGGTGAAAAAGCTTGATAAGTGGGAGCCTCATGAGCTGACTGCAAATAAAAAAAATCGTCATTTTGAAGTGTCATCTTCTCTTATTCTATGCAAAAACAATGAACCACTTCTCAGTCAGATTGTAATGTGCACTAAAAAGTGAACTGTGTATGACAACTGACAACAACCAGCTCGAAGTGTTTGGACCAAGAAGAAGTAACTGGTGACAACCAGCTCAGTGTTTGGACCAAGAAGAAGCTCCAAAGCACTCCCTAAGCCAAACTTGCACCCCAAAAAGTGTCGTGGTCACTGTTTGGTGGTGTGCTGCCATTCTGATCCACTACAGCTTTCTGAGTCCTGGCGAAACCATTACATCTGAGAAGTAGGTTCACCAAATCAATGAGATGCATCGAAAACTGCAATGCCTGTAACTGCTTTAGTCAAGAGAGGGAGCCCAGTTCTTCTCCACGACCACACATTGCACATCCAGTGCTTCAAAAGTTGAATGAATCGGGCTATATAAAGTTTTGCCTTATCCACCATATTCACCTGATCTCTTGCCATCTGACTATGATTTCTTCAAGCATCTTGACAACTTGTTGCAGAGAAAATGCTTCCACAACCTGCAGGAAGCAGAAAAATGCCTTCCAAGAGTTTGTGGAATCCTGAAGCATGTATTTTTATGCTACAGGAATAAACAAACTTACTTCTCATTGGCAAAAATGTGTTGATTGTAATGGTTCCTATTTTGGTTAATAAAGCTGTGTTTGAGCCTAATTATAATGATTTAAAATTCACAGTCTGAAACCACAATTACTTTTTCACCAACCTAATAGCTTGATTTGGAATGAAGGGAAGAGAGTTTTTGCAGCAGGGTTTTGAGAGGCTCAGGTTCCTGTTGGTTGTATGGACTATAAGTATATAGGTTGAACTGGGTGCAAGAAAGCATTTTTGCATTTGATTTAGTGCCCAAAATAACCCGCTCTGAGAAATAAGTATTTCTGTTCCTGTTATTACAGAAGCAAGGAGAAGTTGGGGGGTCAGGGAAGGCAGGAGGGGTATCTCTTTACTATCTTCAGTTAAAGAAGCTTTAAAATGTCATACCATTGTCTTCTGCTGTTTCAG
Seq C2 exon
AAAAGTGATTCATATGTTCTCCACAGCTGAAGGACTGCTGACCCAGAATGACAAGATAACCCCTGATGGGCTCCAGGAGGTGTTTGAAACCAATGTCTTTGGCCACTTTATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005976:ENSBTAT00000007841:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010620=adh_short=FE(24.8=100),PF0010620=adh_short=PU(9.7=34.4)
A:
NA
C2:
PF0010620=adh_short=PD(12.8=41.0),PF0010620=adh_short=FE(33.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]