DreINT0079150 @ danRer10
Intron Retention
Gene
ENSDARG00000088140 | hsd17b7
Description
hydroxysteroid (17-beta) dehydrogenase 7 [Source:ZFIN;Acc:ZDB-GENE-061013-378]
Coordinates
chr6:34969690-34970809:-
Coord C1 exon
chr6:34970717-34970809
Coord A exon
chr6:34969805-34970716
Coord C2 exon
chr6:34969690-34969804
Length
912 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
3' ss Seq
TATGTGCTTTTGATCACCAGAAA
3' ss Score
6.76
Exon sequences
Seq C1 exon
GTTTAACAGATTGGACTATCTGTATCTCAATGCTGGAATCATGCCTAATCCCACGGTGGATCACGTAGCCTTTTATCGGGGCCTGTTTTCTAG
Seq A exon
GTAAAGTATTCACACTATATAAACTACCATTAAATAGTTTATATGTTCAACATATTTGTTTCTTTTGGAAAGAATGAATTAAATTGGATATAAATTGACAGTAAATACAATTATAATGGTACTTTTTTTAAATATACACCATTCTTCTTTTCTGAATAGTTCAGTTAGGCTTATAAAAGATAAAAATATATATAGTTTCAACAAATTTTTAAACAATAGTTTTAATAACCAATTTTTAATAATGTTTTTCTTTGCCATGATGACAGTGCATAGTATTTTTCTACCTATTTTGCAAAAGACTATATTCAGTTTGAAGTTTGATTTAAAGGGTTAGCTAGGTTATTGTGTTAATTAGGTAAGTGTGGTTTGTTCTGCAGCCAATTTAAATAAATAATTTAATTAATTAATTAACTAATAACAGGGCTAATACTGACTTTTAGAAAACATAAAAAAAAATAATAATAAAATCTACTTTTATTCCAGTGAAACTAAAAAAAAATAAGATTTTAAAAATTGTGTTGTTTGATCTGCAGCTAAGTGAAAAAAAAAATAACAGGGTTAATATTGACTTTTATAAAACATTTTAAAAATTAAAAACTACATTTATTCCAGTCAAACTAAAAGAAGTATGATTTTGAAAATTGTGTGGTTTGTTCTGCAGCCAATTAAAAAAATAAATAAACAAATAATGGGGCTAATATTGACTTTTTAAAAATATTGAAATATTAAAAACTTATTTTATTCCAGCCCAACTAAAAGAAATAAGACTTTGAAAATTCCCTTGCTAAGTAAAAATCTCTTGAGGAAATATTTATAAAAAATAAAATAAATTTTAGAGAGCTAATAATTTTTACCTTCAAGTGTATTTGTCTTTGTTGATAATTCTCTATTATATGTGCTTTTGATCACCAG
Seq C2 exon
AAATGCGATTAAAATGTTGACCACGGGGGAGGGTATTCTGACCCAGGAAGATAAGGTCACACCCATTGGTTTGCAGGAGGTGTTTGCTACTAATCTTTTTGGTCATTTCCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088140:ENSDART00000113097:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010620=adh_short=PD(27.1=90.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGACTATCTGTATCTCAATGCTGG
R:
CAGAAGGAAATGACCAAAAAGATTAG
Band lengths:
198-1110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]