MmuINT0079157 @ mm9
Intron Retention
Gene
ENSMUSG00000026675 | Hsd17b7
Description
hydroxysteroid (17-beta) dehydrogenase 7 [Source:MGI Symbol;Acc:MGI:1330808]
Coordinates
chr1:171894522-171895910:-
Coord C1 exon
chr1:171895818-171895910
Coord A exon
chr1:171894637-171895817
Coord C2 exon
chr1:171894522-171894636
Length
1181 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
ACTGTCTTCTGTTGTTTCAGAAA
3' ss Score
10.25
Exon sequences
Seq C1 exon
GTTTCAAAGATTAGACTACTTATATCTGAATGCTGGAATCCTGCCTAATCCACAATTCAACCTCAAGGCATTTTTCTGCGGCATCTTTTCAAG
Seq A exon
GTAATTTCCACAGTCTAGATCAGATCAGTGGTTCTAATCCTGTGGGTAGAGACTCCTTGTGGGGAGGGGCATGTTACCCTTTCAGAAGCGGGTCACGTATCAGATATTCTGCCTACCAGATACTTACATTATGATTCATAACAGTAGCAAAGTTACAGCGAGGAAGTAGCAATGAAGTAACCTGAGGAACTGTACTAGAGGGTCACAGCATTGGGAAGGATGAGAACCACTGTTGTAGGTGAGGCTGAGTGCAAGAGAGGTGTTCATTTTGTTGCCCTGGCTTTGCTTTTGGTGTGTATGTTGAGCTGGGGGATGCTGGGAAGGATGTAGATAAACAGGAAGGAGGAGTTGGTACCACAGCAGGCAAGTCAAGTACTTGGTTTTGTAGGGAGCACTGCCCGTGGCCATGGTTTTCATGGTGGTCGAGCTTCTGGAACATTCCATATCATCAGATGGTTCGTGTTGAAATGGCTGAGTGTGCTGGTCTCGGAACCCTTCTAGATGAGGCGGCATGCTTAGAGAGCCACCAGCCTCTGATGAGGCTGCACTACAAGATGCCCGGCTGTGTGTCAGGAACTCTGACTAGTGAGTTGAGAGAATGCAGGGGACTAATGTCTGCCTGAGAGAGTCCCAGTATACACGGAGTATAGTGGCGTTCAAAGCTATCTAACCACAAGCCAGACTTAGAAATATGTGTGTTTGCAACCCAGTGCATTAATTCATAGAGATTTTTGATGCAGGCGACCTGCACATTTTCTCTTTACTTTTCCTCCATGAAAACAAAACACAACACACATGCATCCCACTATTAGGCTGACATCCCAGCAGGGCAGTCTGTTAATGTGTTTGATGCTCTTAGAATTCCTAGTGAAAAAGACAACCTGGTTGACTTTTCCAGTACTTAAACACACTCAGTATGAGTGAAGACTTTTTTCTCATCAGCATAGCTACGATTGCCTAAGAATAGTTTGCCTCTAATCTGACTGGGTAGTCAGGGCAGGCAAGCATGGGAAGTATTCCTGTGAATTTGGGTGAAAGAAGTATTTGATATCTCATTTAATACAAATGTCCAAGAAATTGGTATTTTCTCATTATAGAATCAAAGAGTGTGTGTGACATCTTTGGTTATTTTCAATTCAAGGAGCTTTAAAAAGTCACACTACTGTCTTCTGTTGTTTCAG
Seq C2 exon
AAATGTGATTCATATGTTCACCACAGCGGAAGGAATTTTGACCCAGAATGACTCGGTCACTGCCGACGGGTTGCAGGAGGTGTTTGAAACCAATCTCTTTGGCCACTTTATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026675-Hsd17b7:NM_010476:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010620=adh_short=PD(23.5=75.0)
A:
NA
C2:
PF0010620=adh_short=PD(1.8=5.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTATATCTGAATGCTGGAATCCTGC
R:
CAGAATAAAGTGGCCAAAGAGATTG
Band lengths:
190-1371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: