RnoINT0071970 @ rn6
Intron Retention
Gene
ENSRNOG00000002826 | Hsd17b7
Description
hydroxysteroid (17-beta) dehydrogenase 7 [Source:RGD Symbol;Acc:2837]
Coordinates
chr13:88303325-88304707:-
Coord C1 exon
chr13:88304615-88304707
Coord A exon
chr13:88303440-88304614
Coord C2 exon
chr13:88303325-88303439
Length
1175 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
ACTGTCTTCTGTTGTTTCAGAAA
3' ss Score
10.25
Exon sequences
Seq C1 exon
GTTTCAAAGATTAGACTACTTATACCTGAACGCCGGAATCATGCCTAACCCCCAGCTAAACCTCAAAGCGTTTTTCTGTGGTATCTTTTCAAG
Seq A exon
GTAATTTTCACAGTCTAGATCAGTGGTTCTAAACCTGTGGGTGGAGACTCCTTGTGGGGAGGGGCGCATGACCCTTTCAGAAGGGGTCACCTATCAGGTATCCCGAGTATCAGATATTTACATTACGATTCATAACAGTAGAAAATTACATTTACAAAGTAGCAATGAAATAATTTTATGGTTGGGGAATCACCACAACATGAGGAGCTATAGTAAAGGGTTATAGCATTAGGAAGGATGAGAACCACTAACTGAATACAAGGAAGGTATTCACTTTGTTGCTACCATTTGCCTTTGGTGTGTATGTTGAGTTGGGGAATGCTGAGAAGGATGGAGATGAACGGAAAGGAGGAGTTGGTACCACAGCGGGCAAGTCAAGTATTCGTTTTTGTGGGGAGCACTGCATGTGGTCATGGTTTTCATAATGGTCTAAGTTTCTGGAACATTCCATGTGGTCAGATGGTTCATGTTGATGTGGCTGAATGTGCTGGTCTCAGAACTCTTCTTGATAAGGCGGCATTCCTAGAGAGCATCCAGCATCTAGGAGGCTGTGTTGCAAGATGGCCGGCTCTGTGTCAGGAACTCTGGCTAGTGAGTTGAGGGAATACAGGAAATGAATGTCTGCCTGAGAGATTCTCAGCACACACATAAAATGGCTTTCAAAGCTATCTAACCACAAGCCAGACGCAGAAATAGCCGTGTTTGCACCCAGTGCATTAATTCATAGAGGTTTTTGATGCAGGCGACCTGCTCACTTTCTCTTTACTTTTCTTCCAGGAAAACAAAACACGCATCCATCCCACTATTAAACCGATCTCACAGCAACACACTCTGCTAATGTGTTCAATGCTCTTAGGATTTCTAGTGAAAGAGACAATCTGGTTAACTTTTTTCTGTAGTTAAACGCACTCAATCTGGGCGAAGACTTTTTCATTAGCACAGCTGTGATTGCCTAAGAACAGTTTCCCTCTAATCTGACTGGGTTGTGGGTGCGGGAAAGTAGGTTAAGTACACCTGGGAATTTGGGGGAGAGGAGTATTTGATATCTCATTTAATACAAATGTCCAAGGAATTGGTGTTTTGTCATTATAGAATCAAAGAAGGTGTGTGTAACGTCTTTGGTGTTTTCAGTTTCAGGAGCTTTAAAAAGTCACTACTGTCTTCTGTTGTTTCAG
Seq C2 exon
AAATGTGATTCATATGTTCTCCACAGCGGAAGGACTTTTGACCCAGAATGACAAGATTACTGCTGATGGGTTCCAGGAGGTGTTTGAAACCAATCTCTTTGGCCACTTTATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002826:ENSRNOT00000003812:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010620=adh_short=FE(25.4=100)
A:
NA
C2:
PF0010620=adh_short=PD(10.7=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGACTACTTATACCTGAACGCCG
R:
CAGGATAAAGTGGCCAAAGAGA
Band lengths:
198-1373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]