HsaINT0082135 @ hg38
Intron Retention
Gene
ENSG00000172183 | ISG20
Description
interferon stimulated exonuclease gene 20 [Source:HGNC Symbol;Acc:HGNC:6130]
Coordinates
chr15:88652110-88656483:+
Coord C1 exon
chr15:88652110-88652310
Coord A exon
chr15:88652311-88655414
Coord C2 exon
chr15:88655415-88656483
Length
3104 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTCTATACTTGTGTCTGCAGAAC
3' ss Score
8.93
Exon sequences
Seq C1 exon
ATCCTGCAGCTCCTGAAAGGCAAGCTGGTGGTGGGTCATGACCTGAAGCACGACTTCCAGGCACTGAAAGAGGACATGAGCGGCTACACAATCTACGACACGTCCACTGACAGGCTGTTGTGGCGTGAGGCCAAGCTGGACCACTGCAGGCGTGTCTCCCTGCGGGTGCTGAGTGAGCGCCTCCTACACAAGAGCATCCAG
Seq A exon
GTGAGAACCTCCTCGTCCTTCTCCTCCTCCCCCCTCCTCCCCCTCCTCCCCCTCCTCCTCACCCATCTCCATTTCCTCCCCCTCCTCCCCCTCCTCCTCCCCCTCCTCCTCCCCCTCCTCCTTCTCCTCCTCCTTCTCCTCCCTCCTCCCCCTCCTCCTCCCCCTCCTCCTCCCCCTCCTCCTTCCCCTCCTCCTTCCCCTCCTCCTTCCCCTCCTCCCCCTTCCCCTCCCCCTTTGCCCTCCTCCCCTTCCTCCTCCCCCTCCCCCTCCCCCACCTCCTCGCTCTTCTCCCCTTCTTCCCCTTCCTCCTCCCCTGTCCCCTCCCTTTCCTCCTCCTCCCTCATGCCCTCGCACACCTCAGGGCAGCTTGCCTGAGGCATTGATGGTAGGTCCTGCTGTGCCTGGTCCCTGGCTGGTAGAGTGAGGATGAGGGCAGGGAAGGGAAAACACCCAACAAAGGTTTGCTTTTGTTGTTGAAATCAAGCCAGTTACCCTGTGGGAAGTGAAGCTTGCTCCCACCATAGAACTCTGGGCAATGATGTAAAGCACACACCTCACCTCAGATATGTCTCACAGCAGGGGCCGGGGAACTGGGATATTTGTACACCAGTTCCCATCAGCCACCAGCTGCTGCTGCTCCTGGGCACTGATTCCGCAGCACTTCTGGCTGGTGGGCAAAGCAGGCAGGAAAAGGCATACGGATATGGGGGGTTGGGAGTTCACCCTGTGGGAAGGGCAGAGGGAGAGGCGCCAGACACTAAGAGCCAGGGCTGTACACAGGGACCCTTCAGGTCAACAGCTCTTTATTAAACACCTGCTGCCTGCTCTAGGCCAGATCCTAGAGACGCAGGGTGAGCAAGACCCGTCTCTGTCCCTGAGCTCTTGGTTGGTTGGGAGGTGGCCCTTAACCAGATCATCAGCACACATGGTAAGGAGTGTGTGACGGAGGGAAGGGCAGTGCCCTGGGAGCAGGATGAAGGATGGGGCTGGCAGGGCAGGAGACCAGATCTGAACAGAGCCTGGAGGGTCTTAGTCAAGGAGGGCAGAAGAAGGCATACAGAGTGGGGCCAGGTGAGTCAAAGCCTGAGGCTCGGGGAGGGGCTGGGGAGCACGGAGCCCGCCCCTAGCCTGCTGGCAAGAGCTGTAGGAATCATGTCCGGAGTAGGGAACAGGGCTGAGTCTGGGCCTGTTAGCCTCAAGGCACATAAGGCACATAAGGGCCAGGCTGGGCTTTTCCTGGAGCCCTTGCCGCTCTGTGGCTCTCAGTCTGGGGCCTTAAGCCTGACCCAGGGCCTTCTCCCAGGCTCTGTCCCTGGGCTCATTAAGCCTGGTTGTTCCAGAAGCTCAGTACCCCACCAGGCAGCTCCTGCCTGCACTGATGCCCCTAGAAACCAGCCCTCCCGCCCGCCCCCGCTCACATGGACAGTGGTGCTACTGATCACTGTGACCAGAACTGACCCACAGGACACAAGGAGCTAACATGGTAGAGCTGTCACAGTTGGGCAGTGGTGTTACTGCCCCTCGAGGGAGTGAAATAGCAGGCCTGTGGCTCCCTGCCAAGCTGCGCGCATGGTAGACTGGGCTGCACAGGAAAGGAAAGACCCTGCCATTTATGAAGCCCTGTGGAGGGTGCTGGGCACAGTTCTCTCATTCCATCCTTTAAGGCAGGTATAATCAGGCCCATTTCACAGAAGAGGAAACAGAGGCCCAGAGAGGAAAAGTGACTTGCCCACGGTCACAGAGCTCATAAGCAGGGGAGCTGGGAATTGCAGCCTGGGGTTTGTCTGATTCCAAATCCGGGGCTCTTTACCTCCCCACTTGGTAATAAAGGGTGCTGGTGCTGCATTCTGCTTCTGTTCTTGGCTTCCTTCTCCATAGAGCAGAGTGGTAGAACACATAACCTCCCTGTGCCTCAGTTTCCTCATCTGTCAAGGATGGTGACAGGGGCAGGTATGCAGAGGCACAGCGCAGACGACGCCACCATGCTACCTGCTTGCTGATTAATGATAGGGTGTCCAAGCCAAAAAATAAAACTAAACATTAAAAAATAAAACAATACAGCGTAATAACGGCAACAAGAAAAAGCCTTTTTGAGCTGGGCCGTCTAACCAGGTGTCCCCAACACCCTGTCTGGAGTGCCTGGAAAAGGAGCCCCTGTGAGAACAGGAAGTCCTCTCTCGACAGAGGGACACCAAGAAAACGCAGCCAGGTCCAACAGCCCGCTGGCTCCCATGCTGGGTACCGGCCAGGACACCAGGGCTGAGCGGGGCATGCGAAGGGAGATGAAAGGTGACTGCACTGAGGATTTGCCCTGTGTACTCGCCTCTGCAAGATCCACATCTCAGCTGCACAACTGGCTGGCTTGTGTGTGAGCCTCAGTTTTATCATCAGTAAAATGGGGGAATAATCATATCCAGCTCAGAGGTTTAACTTCAGCCTAGTGCACGGAAGACATGGTAAATGGTCATCGCTTCTCCCTTGAATGGACCGAGGGCCCCCGACTCCCATAGCACTACCCCATAAAGTCTAGGCTCCCGACTTCGGCATTCAAGGCCTTCAGTGATAAATCCAGGCCCACCATCCGTCCCCACACCACCTTTCACACACCCCCTGCCCCCACCCTCGCAGGCCTCTTATTTTAGCTGCACATGCTCTCCCTGCCTCCGAAATGCTTGCGGCCTTTCCTTTCCATTTATTGACGCCCTTGTGTTCTCTCTGAGCAGCCCTTCCCTGTGTCCCTAGCTGGAGTTCCTCACTCCCTCCTCAGTGTCCTGAAGCTTCTTGTTAGAGCTGCTGCAGCCACTGCGTGTGTCTGACAGCAAGTCTGCAGCCTCTGCCTCCCTTGCGGGACTGCAGGTGACTTGAAGGCACAGCCTGGTTCCCAGGAGGCTGGCTTTCGTGCCACTGGCCCCAGGGCTGAAGGCAGGCCAGCTCCAGCCACCTGCTGAGTCTCCTAAGTCCAGAGTGTCAGAGACCTCAAGAGACTCTCACCCACTGACCCACCTGGGGACTCTGGAAATCGGGATGTGACCAGGGAAGACCCTGTCACGGGGCCTCTGAATTCAGCCTCATCCCAAGTCCCCACTCTATACTTGTGTCTGCAG
Seq C2 exon
AACAGCCTGCTTGGACACAGCTCGGTGGAAGATGCGAGGGCAACGATGGAGCTCTATCAAATCTCCCAGAGAATCCGAGCCCGCCGAGGGCTGCCCCGCCTGGCTGTGTCAGACTGAAGCCCCATCCAGCCCGTTCCGCAGGGACTAGAGGCTTTCGGCTTTTTGGGACAGCAACTACCTTGCTTTTGGAAAATACATTTTTAATAGTAAAGTGGCTCTATATTTTCTCTACGCCATCACTGGGTCCTCTTCTTATTCTTCTCTCCAAGCTGGGTTAACAGTAGACAGGACCCATTTCTGTGTGATGTTAGGAGGGAATGAAGTCTTATGCTGGGGAGGTGGGCAAGTATCAATTTCCTTAATATCTTGAATCCTGTGGGTCCAAAATGTGGCTTGGAAATCTAAGTAGCATGTGGCTTAATTACTAATCCCACCCTTTGCTGTTGCATCCCAGCCCTATTCCTGGTGCATTTATGCCCAGAGAGGTGGCATTATTTCCTGGGGTGGCATTCAGCTCCTCTTGAGTTGGTGCCACAGCATTTGTGGGCTTTGAAGCAAAGGTACAGGAAATGTCAAGGGTGCCACCCCGGCAACCTTGAGCAAGTCACCCCTCCTATTTGTAAAATGAGGAAGGAAAGGTAACAAACTGTGGAGTCAGAGAGAAGTAGGTTGGAATCCTCTTTGTCATTTAGTAGCTGTTTGACCTAAGGTGGTTTACTGAACTTCTCAGTTTCTCCATCTGTAAAATGAGAATTCTAGCAACTCGTAGGGTATTTGTGAGATGTTGCAGGCAAAGCCCCCAGCACCATGCCTGTCCTAGCTTAAGCACCCACCAGGTGTCGATAAGTAATTGTTCTTCCCTGGACTGCCTGCACATCTAGGGCACCCCAGGAAGAGTCACCGCACTCTGTTTCGGGGCTCGGCTCTCTGAGGGGAGGGCATCCTGTATGGGGAGGAGGGTCTGGACCAGAGCTGTCCCTGATCGCTAGAATCAACGGCAGAATTCTTGTTATTTTAATAATAATTAATAATTTAGTGCTTCCACTAAATAAAAATCATTGGAATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172183:ENST00000306072:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(42.6=100)
A:
NA
C2:
PF0092919=RNase_T=PD(11.6=46.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development