HsaINT0082135 @ hg19
Intron Retention
Gene
ENSG00000172183 | ISG20
Description
interferon stimulated exonuclease gene 20kDa [Source:HGNC Symbol;Acc:6130]
Coordinates
chr15:89195341-89198879:+
Coord C1 exon
chr15:89195341-89195541
Coord A exon
chr15:89195542-89198645
Coord C2 exon
chr15:89198646-89198879
Length
3104 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTCTATACTTGTGTCTGCAGAAC
3' ss Score
8.93
Exon sequences
Seq C1 exon
ATCCTGCAGCTCCTGAAAGGCAAGCTGGTGGTGGGTCATGACCTGAAGCACGACTTCCAGGCACTGAAAGAGGACATGAGCGGCTACACAATCTACGACACGTCCACTGACAGGCTGTTGTGGCGTGAGGCCAAGCTGGACCACTGCAGGCGTGTCTCCCTGCGGGTGCTGAGTGAGCGCCTCCTACACAAGAGCATCCAG
Seq A exon
GTGAGAACCTCCTCGTCCTTCTCCTCCTCCCCCCTCCTCCCCCTCCTCCCCCTCCTCCTCACCCATCTCCATTTCCTCCCCCTCCTCCCCCTCCTCCTCCCCCTCCTCCTCCCCCTCCTCCTTCTCCTCCTCCTTCTCCTCCCTCCTCCCCCTCCTCCTCCCCCTCCTCCTCCCCCTCCTCCTTCCCCTCCTCCTTCCCCTCCTCCTTCCCCTCCTCCCCCTTCCCCTCCCCCTTTGCCCTCCTCCCCTTCCTCCTCCCCCTCCCCCTCCCCCACCTCCTCGCTCTTCTCCCCTTCTTCCCCTTCCTCCTCCCCTGTCCCCTCCCTTTCCTCCTCCTCCCTCATGCCCTCGCACACCTCAGGGCAGCTTGCCTGAGGCATTGATGGTAGGTCCTGCTGTGCCTGGTCCCTGGCTGGTAGAGTGAGGATGAGGGCAGGGAAGGGAAAACACCCAACAAAGGTTTGCTTTTGTTGTTGAAATCAAGCCAGTTACCCTGTGGGAAGTGAAGCTTGCTCCCACCATAGAACTCTGGGCAATGATGTAAAGCACACACCTCACCTCAGATATGTCTCACAGCAGGGGCCGGGGAACTGGGATATTTGTACACCAGTTCCCATCAGCCACCAGCTGCTGCTGCTCCTGGGCACTGATTCCGCAGCACTTCTGGCTGGTGGGCAAAGCAGGCAGGAAAAGGCATACGGATATGGGGGGTTGGGAGTTCACCCTGTGGGAAGGGCAGAGGGAGAGGCGCCAGACACTAAGAGCCAGGGCTGTACACAGGGACCCTTCAGGTCAACAGCTCTTTATTAAACACCTGCTGCCTGCTCTAGGCCAGATCCTAGAGACGCAGGGTGAGCAAGACCCGTCTCTGTCCCTGAGCTCTTGGTTGGTTGGGAGGTGGCCCTTAACCAGATCATCAGCACACATGGTAAGGAGTGTGTGACGGAGGGAAGGGCAGTGCCCTGGGAGCAGGATGAAGGATGGGGCTGGCAGGGCAGGAGACCAGATCTGAACAGAGCCTGGAGGGTCTTAGTCAAGGAGGGCAGAAGAAGGCATACAGAGTGGGGCCAGGTGAGTCAAAGCCTGAGGCTCGGGGAGGGGCTGGGGAGCACGGAGCCCGCCCCTAGCCTGCTGGCAAGAGCTGTAGGAATCATGTCCGGAGTAGGGAACAGGGCTGAGTCTGGGCCTGTTAGCCTCAAGGCACATAAGGCACATAAGGGCCAGGCTGGGCTTTTCCTGGAGCCCTTGCCGCTCTGTGGCTCTCAGTCTGGGGCCTTAAGCCTGACCCAGGGCCTTCTCCCAGGCTCTGTCCCTGGGCTCATTAAGCCTGGTTGTTCCAGAAGCTCAGTACCCCACCAGGCAGCTCCTGCCTGCACTGATGCCCCTAGAAACCAGCCCTCCCGCCCGCCCCCGCTCACATGGACAGTGGTGCTACTGATCACTGTGACCAGAACTGACCCACAGGACACAAGGAGCTAACATGGTAGAGCTGTCACAGTTGGGCAGTGGTGTTACTGCCCCTCGAGGGAGTGAAATAGCAGGCCTGTGGCTCCCTGCCAAGCTGCGCGCATGGTAGACTGGGCTGCACAGGAAAGGAAAGACCCTGCCATTTATGAAGCCCTGTGGAGGGTGCTGGGCACAGTTCTCTCATTCCATCCTTTAAGGCAGGTATAATCAGGCCCATTTCACAGAAGAGGAAACAGAGGCCCAGAGAGGAAAAGTGACTTGCCCACGGTCACAGAGCTCATAAGCAGGGGAGCTGGGAATTGCAGCCTGGGGTTTGTCTGATTCCAAATCCGGGGCTCTTTACCTCCCCACTTGGTAATAAAGGGTGCTGGTGCTGCATTCTGCTTCTGTTCTTGGCTTCCTTCTCCATAGAGCAGAGTGGTAGAACACATAACCTCCCTGTGCCTCAGTTTCCTCATCTGTCAAGGATGGTGACAGGGGCAGGTATGCAGAGGCACAGCGCAGACGACGCCACCATGCTACCTGCTTGCTGATTAATGATAGGGTGTCCAAGCCAAAAAATAAAACTAAACATTAAAAAATAAAACAATACAGCGTAATAACGGCAACAAGAAAAAGCCTTTTTGAGCTGGGCCGTCTAACCAGGTGTCCCCAACACCCTGTCTGGAGTGCCTGGAAAAGGAGCCCCTGTGAGAACAGGAAGTCCTCTCTCGACAGAGGGACACCAAGAAAACGCAGCCAGGTCCAACAGCCCGCTGGCTCCCATGCTGGGTACCGGCCAGGACACCAGGGCTGAGCGGGGCATGCGAAGGGAGATGAAAGGTGACTGCACTGAGGATTTGCCCTGTGTACTCGCCTCTGCAAGATCCACATCTCAGCTGCACAACTGGCTGGCTTGTGTGTGAGCCTCAGTTTTATCATCAGTAAAATGGGGGAATAATCATATCCAGCTCAGAGGTTTAACTTCAGCCTAGTGCACGGAAGACATGGTAAATGGTCATCGCTTCTCCCTTGAATGGACCGAGGGCCCCCGACTCCCATAGCACTACCCCATAAAGTCTAGGCTCCCGACTTCGGCATTCAAGGCCTTCAGTGATAAATCCAGGCCCACCATCCGTCCCCACACCACCTTTCACACACCCCCTGCCCCCACCCTCGCAGGCCTCTTATTTTAGCTGCACATGCTCTCCCTGCCTCCGAAATGCTTGCGGCCTTTCCTTTCCATTTATTGACGCCCTTGTGTTCTCTCTGAGCAGCCCTTCCCTGTGTCCCTAGCTGGAGTTCCTCACTCCCTCCTCAGTGTCCTGAAGCTTCTTGTTAGAGCTGCTGCAGCCACTGCGTGTGTCTGACAGCAAGTCTGCAGCCTCTGCCTCCCTTGCGGGACTGCAGGTGACTTGAAGGCACAGCCTGGTTCCCAGGAGGCTGGCTTTCGTGCCACTGGCCCCAGGGCTGAAGGCAGGCCAGCTCCAGCCACCTGCTGAGTCTCCTAAGTCCAGAGTGTCAGAGACCTCAAGAGACTCTCACCCACTGACCCACCTGGGGACTCTGGAAATCGGGATGTGACCAGGGAAGACCCTGTCACGGGGCCTCTGAATTCAGCCTCATCCCAAGTCCCCACTCTATACTTGTGTCTGCAG
Seq C2 exon
AACAGCCTGCTTGGACACAGCTCGGTGGAAGATGCGAGGGCAACGATGGAGCTCTATCAAATCTCCCAGAGAATCCGAGCCCGCCGAGGGCTGCCCCGCCTGGCTGTGTCAGACTGAAGCCCCATCCAGCCCGTTCCGCAGGGACTAGAGGCTTTCGGCTTTTTGGGACAGCAACTACCTTGCTTTTGGAAAATACATTTTTAATAGTAAAGTGGCTCTATATTTTCTCTACGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172183-ISG20:NM_002201:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(42.6=100)
A:
NA
C2:
PF0092919=RNase_T=PD(11.6=46.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)