BtaINT0077550 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014762 | ISG20
Description
interferon stimulated exonuclease gene 20kDa [Source:HGNC Symbol;Acc:HGNC:6130]
Coordinates
chr21:20029207-20030685:+
Coord C1 exon
chr21:20029207-20029407
Coord A exon
chr21:20029408-20030602
Coord C2 exon
chr21:20030603-20030685
Length
1195 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCTCTGTCCTGTGTCTGCAGGAC
3' ss Score
11.74
Exon sequences
Seq C1 exon
ATCCTGCAGGTGCTGAAGGGCAAGCTGGTGGTGGGCCACGACCTGAAGCACGACTTCAAGGCGCTGAAGGAGAACATGAGCGACTACGCCATCTATGACACGGCTGCCGACCGGCGGTTGTGGCGCGAGGCTGGCCTGCAGTACTGCCGGCGGGTCTCCCTGCGGGTGCTGAGCCAGCGCCTCCTCGGGCGGCGCATCCAG
Seq A exon
GTGAGGGCCACCCTGTTACCTGGCGGGGGTGGGGGGCTGGCCTTCCCTGCAGGACTCTAAAGTCCCCCAGTGCCTCCACAGCACATATGCAGCCCCAGAGATGTTCTGCTCACCCCAACTCCCCCACGTAGTCCTGAGAGGCTGTGTGCTCTGAGAGACATGGGCTTTCCCCAGAAGGAGGGCGGGCACCGCGTCCATCTGAGAGCTGACCTGGGAAGCCTGTAGGGTGAGGCCGAGGGCCAGGAAAGGGAAGGCAGCCCATCAAAGTGATTTAGTTTGTTTTCAGTCAGGCCAGTTTCCCTGTGGGTAACTGAGGCTTCACCCTCCAGCCCACCTCAGGAAACAGTGTATAGCGCAGACCTCGGGTGTGCCCAGGGAGCCGCATTGTTTACACACAGCGCCCATCAGGCCGCGGCTGATACTGCTCTCGGGGCCCTAACTCCGAGCCCCAGGCAGGGGCAGGCATGCTGGGAGCTCACCAGGGCCCAGGGAGGCTGGCTGGACACTAGGAACTGCGGCCACTTGGGCTCAGCGGATGTTTAAGAAGCACCTGCTCGGGTCCAGGCTGGACCAGAGGCTGAGGACCTGGGTGAGGAAGATCCCTCTGGTCCTTGAGAAACTCTTGGTTGAAGGGAGGGAGGCCCATGACCTGTCTATCAACACATCTGAGCAGAGAGGGCAGGCATCCTGAGCAGGGATGGAGGACGGGGTCAGGCAGGATACCAAGTCTGAGTGGAGGGTGAAGGATATGTCTTAGTGGAGGAGGCAGGAGAGGGGGGCCTGGGGAGGGGAGAGCCTGAGCCCCAGTCTGAGGGATGGGGGGCAGCTTGTCTGGGGAGCAGAAATGTGCAGGAGGCAGGGGATGGGCGTGAGTTTGGGCCCCTCTGCAGGGCTTGTGGCACCAGGGATCCAGGACAGAGTGTCAGCTCCTGGACTCGCTGAAGAGCCCTGTTCTCAATGTGCTGAGCAAGGAGCACTCTGGAAACATCTGTGTCCATGTTCCCCGGGCCCTGGGCTCCTGTGAGAACTGCTTGAAGCCAGGCCTGCTCCAGCCACCATCTGAGTCTGTGTATCAGGGGCTATGGAGACTCACCCTGACCCACTTCAGCCCTGGACTCAGGCTGTGAGCAGGGAAGGCCCAGGTCCCATAGTGCCTGGATTCAGCCCCCAGCCCCTCTCTGTCCTGTGTCTGCAG
Seq C2 exon
GACAGCGTGCTGGGACATAACTCGGTGGAAGACGCCAGGGCAGCCATGGAGCTCTACCGCATCTCCAGGAGAATTCGAGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014762:ENSBTAT00000065058:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(42.6=100)
A:
NA
C2:
PF0092919=RNase_T=PD(11.6=62.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGCTGAAGGGCAAGC
R:
TGCTCTCGAATTCTCCTGGAGA
Band lengths:
278-1473
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]