MmuINT0083410 @ mm9
Intron Retention
Gene
ENSMUSG00000039236 | Isg20
Description
interferon-stimulated protein [Source:MGI Symbol;Acc:MGI:1928895]
Coordinates
chr7:86061419-86065282:+
Coord C1 exon
chr7:86061419-86061619
Coord A exon
chr7:86061620-86064931
Coord C2 exon
chr7:86064932-86065282
Length
3312 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGCTCTCCCTGTGTCTGCAGAAC
3' ss Score
10.96
Exon sequences
Seq C1 exon
ATCCTGCAGCTTCTGAAAGGCAAGCTGGTGGTGGGCCATGACCTGAAGCACGACTTCAATGCCCTGAAGGAGGATATGAGCAAGTACACCATCTATGACACGTCCACAGACAGGCTGCTGTGGCATGAGGCCAAGCTGCAGTACTACAGCCGAGTGTCCCTGAGGCTGCTGTGTAAGCGCCTGCTACACAAGAACATCCAG
Seq A exon
GTGAGGAGTCTCCCGGCCCCCATGACCCTTCTTGTCTCTCTCTCTTCTCCCTCCTCCCTCTCGTTCTCCCTCTTCCCACTCAGATGCTCTTTCTCTTTCTCCTTCCTCTCCTACTCCTCCAAGCAAGGAGTTCTCCTCCTTTCTTCCTTAGTCCTCCCTCTCCTTCCTTGCTTCTAAAAGTGAGGGTCTTCCTCTCCCTCCTCCCCACACTCCCACTCCTCCCAAGGGCAGATCAGTCCCACCTGCCTAAGCTGGCTCCAGGTAAGGAACCTCTGCAGCCTGCTGGCTCTAGGCCTCATCCATCCTCCAGGACGCCACACCAACACGTGAGGATTCGCAGTGCAGATGTGTGACCCCCAAGACTCTTCCCTCCACTCCCCAGAGACTGGATGCTTGTATGTGTGATGTGTCTTTGCCTGCAGGAGACCAGAGCCCGGGAAAGGAACTCAGGAAGCCTCTTTGTGAGGTGCTCCAGGAGCACCCATAGGGAAGGGAAAGGAGAGAGCCCCTGGTTTAGACTCCTTGGTTTAAACCCTGGGCATCACGAGACTGATGCCATGGCAGCTGCCCTCCTTACAGGGAAGTGACGGAAAGCCTGCATCTCCCATGGCCGTAGTGACCTGACAGCTGGGCGTTCCTGCCCTGGATCAATCATTGCTGTTCCTGGGTGCCACCTCCTTGGCATGTGGCATGGGACTCACCCTCACCCAAGAAAGAAGAACCTTGGGTGGGGGACAAACACTACACAAGGGCTCTCCTGGTCAACAAGTTTCTTTTGTTTTGGCTTTGGTTTTCAAGACAAGGGTTCTTTGTGTAGTCCTGGCTATCCTGGAACTCTCTCTGTAGATCAGGCTGGCCTCGAACTTACAGAGATCTGCCTATCTCTGCCTCCTGAGGGCTGGGATTTAAAGGTGTAAGCCAGCACTGTTCAGCTGTTTTTGTTTTTGTTTTTGTTGTGGTTGTGTTTTGTTTTGTTTTTTAATTTTATTTTCAGCACTGGGGGAATCAGACCCAGAGCTTTGAACTTAACACGTGGAGCAAGTACCCTACTGTGAACTACATCCCTAGTCAGCCTTTGTTCTCTTACAGTAGGCTCTGGCTATGTGGCCTTATGTTGGTAAATTCATAATCCTTCTCCCTCAGCCTTCTGAATACTGGTATCGAAGGTGTTATGACTGTGTCAGACACTGGAGGTGAGCACGCCATACCCCTGTCTAGGAGGAACTCTTGGTTCCCAGGGGCAGGCCCCCAGCACTGTCCAATAGAAGGTAGGGGGTAGTGGGGGTTAAGACTCAGTTGGCTGAGTGCTTTCCTAGCATGCGCAAAGCCCCATGTTCAGTCCCCAGCACCACATAAACCAAGCATGGCCTGCGCCTGAGTTCTAGCACTTGTGAGGTAGAACGGGAAGATCAGAAATTTCCGGTTACCCTCAGCCACAGAGGCTAACCTTAAAATATGGGTGTGGGGCATAGTATCCCTGGGATGGGGAAAATGGTGGTCGATAGGATAGGAGAGTAAATCCCAGCACCATTTACAGGACCAAAGTCACAAAGGTCTAGAGAGAGAAAGGAGAGGGCTGGAGAGGGTCCAAGAGGGTCCATGAGGGCCTGGACTGTGGGGCTAACTTGACTGAGTGAATGGCTAGTGGCATGGAGCCCCATCCCGTATTTGTAGAGATTGTGTTGGAAGCAGGGGTGGGCCTGAACCTGGCTGGTCTGTCAGTCTCCTGACCTAGGATAAAGGTCCTGACTTTTCTTGTAACCTGGGGGCATGTGGTGATCTGGTGTGCCTGGTGACTCAGGAGCCCTACAAGGATATTTGTGTACCTGTCCCTCCCTACCCTCTGTAGCTCTCAGCTCAGGCCTTGTTCTGGGAAACCTTGAACCTGGTCTGCAGGCCTCTTAAGCTCTGTTCCTCAGCTGTGTTAGTTCTCCGGTTCACTCTCCTCACCAGCTCCCACCTCACTGATGTCCTCAGAACCTGCCCTTCAGCTCCTGCCTGAGGGGAATCACCCTGCTGATCACCTCAATGAGAGCTGGCCCAGGCTTGTCACAGTCAGGTGCTGATGCCGCCCTTCAAGGGCATGAGCACCACAGGAGGCGAGGGAAAGGCCCTCTGTACTCAGCCCTAGGGCATGTTGGGAACTGCTGAACTTCTCGTGCCTTTGGAGCAGGTGTACCCAGATCATTTTACAGAAGAGGAAGCAGGCACAGATAGGTTGGAAACTTGCCTGAGGCCCCGGGAGGGTGTCTAAAACTGGGACCAAGGCCAGAACTACCCTCTTCTCATGGCTGACACCTCCCACCCCACACAGAAGATGCTCCAGCCACCTGCAGCTTCCACCTCAGATAGCAAAGCAGTAGACTTCAGAAACCTGTCCTTAGTTCCCTTGCCTGGCAAGTGAGGGTTGGTGACCCGGGCAAGTCTTTGGAGCCACCTTGGGAAGTAGAAGACACCACAGCCACCTGCTTATTGACACCATAGGATAGGATGCTGCAGCCTCCCTGAGCTGGGCCTCCCTGCAGGTGTTCCTAGCCCCTGGTCTGGAGGGTGGTGGAAAAGGAGCCCTTGGGAGGAAAGGCAGGCCACCTTAGCAGATGGACATCATCAGAGAAACAGGCCTGCTGATCCCTCTGCAGCCAGATGCAGGCAAGACTGCAACAGCCAGGCCTGGAAAGCACAGGGGGGTGAAAGATGCTGCCGGAGTTGGCCTGGCTCTCGGACATAAGCTTTCACTCCATAACATTTGCAGTGTTTGAGCCTGTGTCACCACTACTAAAATTGAGGATGATCAGATGTAGCTCTTGGAGTTTAGGAAGGTTCCACAGGTCAAATGATTATTAGCATAGCAGTGGCATGTGGTAGGTGGCAGTTATTTCTTCCTGAATGGAAAGTATACAGAACCCAGTTCCACTGTGTGCTCTGCCCCCCTTCAAAGAGCTTCTGTTTTAGCGCCTCGCCCTTCTCGTGTTTCCCAGGTCCTGCCTGGCAGCCTCTTGGGGGTTGGAGGATGCATCTTGCCAGGCACTGACATCCTTCATCTTCTGCTCTATGTCGGAATGGTCAGGATTGCTGATCTCCGCTTGCTGACGCCCTTTCTACCTCCGAGCTGCCTCGCTTGCCCACTGCTCCCGGAGAGTCTTGCTTCTGCTCGCTCGCACGCTGTTATTTCTGCCCTGTCCAGCTCTAGTCACCTGCTGACACCCCTCCCAAACCCGAGTCAGGGACCTCAGGGACACGTGGACAGACTGAGCGGCCAGCTCCAGGACTGGGGAGGCAGCCCCTTAGCTCCTGCTCTCCCTGTGTCTGCAG
Seq C2 exon
AACAACTGGCGGGGCCACTGCTCTGTGGAAGATGCCAGGGCCACAATGGAGCTCTACAAAATCTCTCAGCGACTCAGAGCCCAGCGAGGGCTGCCTTGCCCTGGGACGTCAGACTGAACTTCATCCTCATCCAGGGTTAGAAGCTGCCACTCCTCAAGTTCTCCATGAATGAGACCTGTTTCTAACAACCACTGCCACCAACCACCGCAATGTGTAAAACCAAGAACACTCCCCCATTACAGCAACTCTCTTGCTTTGAGGCAAAAACAACAACAACAACAACAACAACAACAACAGCAAAACCAAAAAAAAAAAAAAACTTTAGTAATAAATGGCTTTGATTTTGTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039236-Isg20:NM_001113527:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(42.6=100)
A:
NA
C2:
PF0092919=RNase_T=PD(11.6=46.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: