HsaINT0082922 @ hg19
Intron Retention
Gene
ENSG00000082781 | ITGB5
Description
integrin, beta 5 [Source:HGNC Symbol;Acc:6160]
Coordinates
chr3:124515235-124528003:-
Coord C1 exon
chr3:124527869-124528003
Coord A exon
chr3:124515665-124527868
Coord C2 exon
chr3:124515235-124515664
Length
12204 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
CTTCTCTTCCTTCTGCCCAGGCA
3' ss Score
8.63
Exon sequences
Seq C1 exon
AGTATCCGGTCTAAAGTGGAGTTGTCAGTCTGGGATCAGCCTGAGGATCTTAATCTCTTCTTTACTGCTACCTGCCAAGATGGGGTATCCTATCCTGGTCAGAGGAAGTGTGAGGGTCTGAAGATTGGGGACACG
Seq A exon
GTAAGTCTCACCCCAAGTTTGTATGAACTCTTGTTAGCATTGGTCATCAGTCTTTGGGTTCTAATAACTTTTGTGACTTATTAAGAGTCCTTTCGGAATTTATATTCTGTTTTCCAATTCAGCATCCCAGAGGAGTCTCCTAAGCCTGTTTTGCATGATGTGTTCAGAGTCTCAGGTGAACTTGTTAAAGAGCCCAGTCAATAGACAGCCCTCAGCGCATTGCTACCTGAGGCTTTCTTAAGTTGGCATCGTGACTTTGGTGTTTTAAACCATTATCCTCTTAGCTTGACACAGTTGTAATCAGGAGAAAGAGTACAGGTAGGAATCCAGGAGACCTGTCTTTCATTCCTAGTCTTCTGCAAATAGCTCTGTTCCTTGGATAATCTGACCCTCACTTTTCCGTTCTGTGAAATGTAAAGAAAGCCACTCCCCCCATTCTGTTTTGGTGAAATAGAATGGATGACTCTACAGCAGTGGAGGACACAGATGCCTTGTCCAGATTAAGTTTATTCAAATGATGTGTGAAGATGTGTGCCTCTGCGCTAAACCAAGGACTTGCGTGAGGGAGCAGGGAGGAGGATATGTGGGCAACAAGAACACAGACACAGACACGGGCACAGAGGCCGCGAGTGGTGATGGAGAGCTAGCCACACATCTTCTGGAGGTCCTGCTGCTAGAAGCAGATCATGAGCTCCATTCCTGACTTGCTTTGTTGACAGGTCCAGTGCTCAGAAAACAGAAAGCCAGTGAGGGATAATTCTCTTCTACACTTAAAAGAATCTAGTTAGAAACAAAAAAATTATAGAGACCTTACAAATAGGTGGCTATATCCTCTTGGCATTCATAGCACTCATGACGGCCAAGGCGGATATAAGCTGACTCATCCCCCTGGCTTCAGGGAAAGAGCTTGCGGAGACAGGGACAGTCTCGTGGCTGGTAGCAGTGGTCTCCTCGGGTTTCTCCATATTCCACTGTAGATCCTCTCCCATCCCTGCCTTCACACTTGTCCCTCACCCACTTCACAACACACAGACATACCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGAAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAAGCTCTGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCGCCAGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGGTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCACCCGCCTCGGCCTCCGAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCCAGCCACAGACATACCTCTTACCCTTCTCAAATCTTTCTGCAGTGCCTCGCTCCCCCAAATAAAGGGACAGTTCAAAATATCATATGGAAGTTGAGAAAATGAAAGCCTCTTATGACTGGCTACCAAGGCCTTTTCTAAGACACGTTGTTTCCAAGTTTCTTTTGCTTTTAACAAGATTGAAAGAAGGCCTAATCAAGCTGTCTGATGATAAGTCATTACAAATGATAATTTATTTATTTATTTATTTATTTGGAGAGAGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCCGTGGCACGATCTCGGCTCACTGCAACCTCCGCTTCCCAGGTTCGAACGATTCTCATGCCTCCGCCTCCCAAGTAGCTGGGATTATAGGCATGCACCACCACACCTGGCTAATTTATGTATTTTTAGTAGAGACGGAGTTTCACCATGTTGCTCAGGCTGGTCTTGAACTTCTGGGCTCAAGGGATCCTTCCACTGCAGCCTCCCAAAGTGCTGGCATTATAGGTGTGAGCCACCATGCCTGCCCACAAATGATTATTTATGGCTTTTAACTCAGAAGACATTCATAGAACAAGGTGACATTGCTGTTACAAAACTCTTGTTCCCATCTTCCTATTTATGTGAACTTTTTTTGTGCTTAAATCTCTACAAATGAAAAATAGAAATATAATTGATGTGGATCCCTGTCTTGTTTAGCAATAATTAATATTATTTTACATCGGGGGGAAAGCCTCATCTCATTAAAGAGGTACTTCCAATAACATTTTACTGTTTATTTTTAATAATTGTAGGAAGTTGCAATGTATTTATGTTGTTTTCATCCATTATAATGATTGCTCAATCCAGATGATTAAAAAAAAAAACACTAATGCTTTACAGTGACAGGACAGGATTTAAAGAGATAGTTATAAAAAATGGAATGAGGCCAGGCGCAGTGGCTTACACCTGTAATCCCAGCACTTTGGAAGGCCTAGGCGGGTGGATCATGAAGTTAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAAAAATTAGCTGGGAGTGATGGCGGGTACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCAGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATGGAATGAGGCAGAAATACCAAAAAACCCCAACAACATGTAAGTGAATTCTATAGATCTGTGGGTGGAATGTTTGGTGTAGCATGTCAGGAAAGCTGAAGGATAATGTGGGAAATATACCCAAACAAGGAACCCTTTACTTGGAGAAATAGGTATGATGGAAAAGAGATGGGAGAGGGATGGACTGTCTAATCTAGCATACGCCAGGTTTCAGGAAGGCTCTTGACAATTTCTAATGACATCCTTATAAATAAGGCAAATATTTAATAATATGGGTTGACAACAGCACAGTCATGCGGATTTGTAGCTGGGTGAACATGTTTTCTGAGAGTGTTGATAATGCAGCCAGAGGGAGGACTTGACTGAGGTTCCAATGTCTCTTGTCTGTTGTGTTTATCATTGGCTTGGGTTGAACTCATAGGAGACCTTATCAAATGTGGGAAGGCTGCAGAGCTGGAGAAAACAGCTTATGTTATAAAGCAGGAAAGCCAAGATTTAAAAATATTTTTCGAAATTGAGATGGATTGAAATCATGAAGATTAATGTCTTATGTTTTAGTTCAGAATGTTACTAGGATATAGGAAACTTGGTTTGATAGTAAAAGAAAAACATCTGGCAGACTATAATGGCTCAAAGGCTCAATGCAAATAAACAGTGATTAAAAAAAAAAAGTCCGCCAGGCGCAGTGGCTCATGCCTGTAATCTCAATACTTTGGGAACTCAAGGCGGGAGGATCACTTGAAGCCAGGAGTTTAAAACCAGCCTGGACAATGAAATGAGACCCCCATCTCTACAGAAAATAAAAAATTAGCCGGGCATGGTAGCGCACACCTGTGGTCCCAGCTGCTCAGGAGGCTGAGGCCAGAGGATGGCTTAAGCCTAGAAGTTCAAGGCAGCAGTGAGCTATGATCACACCACTGTATTCTAGCATAGATAACAGAGTGAGACCTCGTCTCTTAAAAAAAAAAAGTAATGGCAGTAATGGCTAGGCACAGTGACTCACACCTATAATCCTAGCATTTTGGGAGACTGAGACTTGTTAATTGCTTGAGCTCAGGAGTTCGAGACCAGCCTGGGCAACATGGCAAAACCCAGTCTCCCCCAAAAATACAAAAATCATCTGGGCGTGGTGGAGAGCACCTGTGGTCCCACCTAGTTGAGAAGCTGAGGTGGGAGGATCGCTGGAGTGTGAGAAGTTGAGGCTGCAGTGAGCCATGACTGGGACACTGCACTCCAGCCTGGGTGACAGAGTGAGACCCTGTCAGAAAGAAAGAAAGAGAGAGAGAGAGAGAAAGGGAGAAAGGAAGGGAAAGGAAGGAGAGAGAGAGAGAGAAAGAAAGAAACGGAAAGGAAGGGCAGGGCAGGGCAGGGAGGGAGGGCAGGGCAGGGCAGGGCAAAAGAAAGGAAGGAAGGAAGAAGAAAGAAAAAGAAAGAAGGAAGGAAGGAAGGAAAGAAAGAAAGGCGGGCACGGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCTGAGACGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAACCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCGGGGCGTGGTGATGTGCACCTGTATTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTCAAACCTGGAAGGCAGAGGTTGCAGTGAGCCAAGATTGCACCACTGCACTCTAGCCTGGGTGACAGAACAAGACTCCTTCTCAAAAACAAACAAACAAAAAAGATAAGTGAATAAAAAGTAATGCCAGTTGAAGCTGTGTTTAATAGAGATATTTTGAAACCTCACACCTGGAGTTCTGTATTTTGTTCTTTATTTTATTTTATTTTATTTTATTTTTAGAGACAGGGTCTTGCTCTTGTTACCAGGCTGCAGTACAGTGGCTTGATCATAGTGGACTGTAACCTCTAACTCCAAGGCTCAGGCAATCCTCCCGCCTCAGCCTCCCAAGTAGCTGGGACCACAGACCTGCACCACCATGCCCAGCTAATTTCTTTGTGGTTGTTTTTTTTGTTTTGTTTTGTTTTTTAAGAAACAGAGTCTTGCTATGTTGCCCAGAATGGTTTTGAACTCCTGGCCTCAAGTGATCCTCCTGCCTCGACCTCCCAAACTACTGGGACTACAGGCATGAGCCACTGTGCCCAGCCCGGTTCTTTTTTGAAAAAGAAAAGTGACAAGCAACTATCATGATGAATTGTTTAGAAGCTAGAAAGGTCAAAGGAACTAATGTTTGTCAGCAGAAAGATTGTAAAGTCAGAACTCTTTCCAGATGCAAAAAAAACTGAAGCCACTTTATGCTGCCCAAAGTGAAAAGGAGAGTCATTCTAAATATATTGGGGTTCCTTATGGAAAGCAGGAATACAGTTAGTCTTGGGAAGGACCAGAAACAACCTAGACAATGAGTGGTCTGTGGTCACTAATTGCCTGTGAGGAAGACATTGTTTTTCATGCTGACAGATGGGGAAGACTGAGGCACAAAGCATACAGGTACATAGCCTGAAGTGTCGACATGAAAATTCAAAGCCAGGGCTTTCTGTTCTGAAGCCAGCTCCCTCACCACCTTTATCCGGCTTCTTGGTGCCCACGATTCTATTCTACCAAACCTATTTCAAAGGACTCTACCAGCACAAAGTACAATCCTGAGGAACAGGAGCCTCCACGGGAGAGTGCCGCTGACTGAGCCCCCCTGCACCATGTGGGGAGCCCAGCGCTCGCGCACTGCTGACAGGCAGCCTGGGATTTGAGGATGAGCGTGACTTGCCCCAGCTCACCCAGCTAAGAGACAGTGAACTCACAAGCCAAACCAAGGCCGTTCCCCCTCCACACCAGGTCATCTCGCTCATCACTGCCTCCCCATTACAGAGCAAATTGTATTTGTTTGCATGGAATGGGGACATCCAATGTGCCGTGTCCAACGTGCCCCTTACTGTGGTGGGGGCATTACTGCTGCTGTCTGCCTCTTACAGCAGCTTTATAAGGGAGCTGTTCCTTCGCCATTTTATGTATGAAAAACTGAGACTCAAAGTGGGGCCTGAGAAGCGTGCCAGAAGCCTCAAGCATCGGGAGCCAAGTTGGGGGCTGCTTCCGAGGCCACAGTGCATGCGTTTCCCACACACTTTGGGGAGTAACAGCTTTTAGGAAGCATACAGTGGTGTCATGGCCACTTATGGATGGACACCCTAGTGTACAGATTTTGATTTTTGCTGGGATACCTCAGAAAAATGGGGAAATTGTCCAGAACTTGAAAAAGATTTTACATGATTTTTCAAATGCTCTGAAAATCTCAGAGGTATTGAAGTGGTTTTTAGAGCATTCGAAGCGACACTAAAGAGGAGGGGAACTTCTGCTCAGGCCGGCACCTTTGACAGCTCTTCCTGTGGGATTGGATGGGCCGCAGCCCTGTGGGAACAGCAGGGGTCCTAGGCAACTGACCCGAGCTGGCCCTTTGTTTCTACTCACTGTCCCAGTGTTGTTGTCTTGCTGTCCGAGGGCCATGGTCACATGGCCCCTGACTCCACTGCGAGGGCTGTGGGGTTTTTGTTTTCTGTGGATGAAGACAGGCTGGCACAGGGCAGTGGCCACTCTGCTCTTCAGAGCCAGACATGATTCTGTTCACAAGAGCCACACCAGGCCATGCAGGCCAGGAGAGGCAGCTCTCTTGAGGGCCTTGGAGGCCATCGGGGGCAGAACTGGCTCCATCATTTGTAGGTCCCAGTGCAAAATGAAAATATGGGGTCCATGTTCAAAAATCATTAAGAATTCCAACACAGCAACCACAGAGCATTAGAGTAAGCGTGGGCCCTTCTGAGTGGGGGCCCTTGTGACTGCACAGGCATACACCAGGGAGCCGGCCCTGGCACGGGGAGTTGAGGGGCTTTCCCTCTTCGTTGAAGGAGAGGGGTCTGTCAGTTCCTCTGATCCCCAAGACAGAAGGGGTGCACTTACAGCTGGGACCAGTCTGGTTTTCTTAACCCTGGCCCAAGAAGGCAAACTTTCCATCCCTTCTCTCAGGCTGAACTGTCTCCAAAGCATTGACAGTTGGGCTTTGGCAAGCAGGGGTGCTACTGAGTGTGTGAGTATTTCCCTCTGGACGTGTGTCCCCAAGCCATACATTTCAGAACTTGCCAGTGACTGTGCTGACATCCACTCGTACTCAGTAAGTGTTTATGTACCAAATCCCGTGCTCACTCAAGATGGACAAATGAGGCCACAGATCAGGGGCTCAGAGTCTGGTGGAGGAAATAACATGCAGAGGAGTCAGCCCCGTAGAGGGTGATGAGTGCTGTGGGAAAGCCAGGTGTGGCACTGCAGGAGCCCAAGGAAGAAGGGCCCAGCACTGCAGAGGGAGCTGTTGGAGCTGAGGCTCAGAGCACCAGTAGGAGTTTCCCAGACAGAGAAAGCCGGGGTGGGCTGGTCCCATCAGTGGGCCTCCCATGTGCATATTGGCAAGATGTGTCTGCTAGGGTGTGAAGAGCATCATCCTTTGGCCAGTGGAAAGCAGCTGATGGTGACGGCCATGGAGGCAAGAGGAGTGGGCTGGGGAGGGAGGGGAGAGTGGCTGGCTTGGGCCACAGTGGTGAAATATACCTGCCAACCTAAGGGGTCTGGCCATTCTGGCCATTGTTTGGCAAGTGGGTTCCATTCTTTGGTGGCAGGAGTTGGGAGGGCTATGGGCAAGTCAGGGAATGGTGGTGGGGGTAGACAAGAGTATCAAGCATAGCTGGAGGGTCTGGGGACTCCCCTGGAGAAGAGGGATTAGGAAAAGCAGACACAGTTCAGGTGTCATCAGGGATCTCAGGGTCTGGCCTGTGGACAAGGACACGGCCCGTATGAGGGGCAGCCAGATGGACCTCGCCTCCTCATTATCACAGCTTCCTGCAGAGGTGGAAGAGGTGCAGGCTGTGGTTCTGTGACAACCCTGTGTGCTCTGGGTCAAGACAGATGTCTAGCAAGAAGCAGGAGAGGTGGCAGGGCAGGGGCTGAGGGGCAGGGATGTCCTCAAAGAGAAATACGGCTTAAATCAAACCTTGAAAGCCCCAAATCCAGTGAGATTCTCTTTCCCAGTGATTTCAATTGTTTCCCTAATTTTCCTCCCTTTATCCTACACCAACCATCGGGAGTCAGTTTACTCAGGAACTGGCTTCAACAAATCAGTATGCAAGTGGCTGGCTGTGAGGCTAGCACAGACGCCCAGCACAAAGCAGCCAGTGAACCCCGTCATGGGCTTCCCACAGCACCCCCTCCCCGCTCCCGTCCACTCCTCGGGACTCTGTAGCCTGTGCCCATCCCAGCTCCTTTTTTGTTGAGATCTGAGCAGACTTGGCATCTGCATAGGATAGCCCTGGATTTGGTGGGTTCAGGGTGGGGGCTGGGCAGCCCTTTTGAAAGGGTGCATCAGGCCAGTCAGCTCCACAGGGGAACCAGGAGAATCCCAATGAAGTTCTAATAACAAGACCGAGTGGGAGGGCTGCTGTGTCTGTGACCTTCCTCTGGAATCTCAGAGCGAATGAATGGAAAGTGTCCAGGAACTGGGGAGCCTTCAGTATCAGTTGAAGTTCTCAGGAATCAGGGGAGGGACTCGAAGAGGCCTCATTCCAGCTGCCTTCCAGCCTTTCTGGATTCTTTCCAAATCCAGTAGGGAAAATGGACCCTCTGAAAGGAGGGGTAAGCAAACAGATTTCCTTGCTGGTCCTGAAGTGCTTTTTATAGCACTTCCCGTGCCCAGCAGGAGCTGAGACCCAGTGGCTGAAATAGACAGAACATTCTCTGGTTATCAGGCATCTGGCTACACTCCAGGCTGCACAGGGCCAGACAGATAGCACCTCACTTGGACCGAAGGCTTGGCTGGGGAAGGCCTCAGGACCTGCTTGAAAGCTGGGCCCTCCTTGCTTGCCCAGCTGGGCAGACAGTGCCCAAGTGTTTCTACATGCTGGTGATTGAGTGCCAGAACTTTAGGGGTGCCCTAACCTCCCACTTTCTCCCAGACACATCAGCAAGATTCTGGAGACTTAACTCTCACTTTCATTGCTTTAACCCCAAGGCAGGCAAGTTTCCATGAGACAAGGTTATACTCACAGGTGTGTACTCCCCACAGTCTTTCAATAATTAAATGCCTTTGGCTCTTGGTCCAGGTCATTCCTCTGTAGTTTATTCAGTTTCTGACCCGCAGATGCCTCTGTGGAGCACAAGTCCAGCAAGTTGTAGCCCTAGAAGTACAGGGTTTCAGCTGTAACTTGAAGCAAGCTACAGGTAGCTTCAAGCATGTCACTGTTGTGGGAGCTTCAAGCAAATAGTAATAGGAGATGCAAGCAAGTTTCTCTCTGGGCCTCAGAAGGGAGGGATGGCATCTGCCCCTCAAAGCTCCATTCACCTCTGCATTCTTGATGGCCCCACGGGTGGCTTCGGGCAGGCATAGTCCCCACTCTTATCCTATCTGCAGGCTCAAATCGTTCCCAGCCCACGGCAGAAAGATGTGGAGATGCCTCTGGCCACCACTTTGGGGATCACCATCAAGGGGTCCCTTTAGTAAGCCAGGCTGGCTCTCCCTGCGCACCCCGATGAGGTAGACCTCATTCCCCCGTCTAGGAGGTGGATATGCTAAGGAGAGCGCGGGCCCTGCTCTAGGCCTGGCCCCACTCATCAGCTGTGTGAGCATGACTAAATCCACCAACCCCGCCAACCCTGTTTTCTCTCTGGTAAAATGAGGACACTTCCTTCTAGGGCATTTAAAAGAGATGCTTGTGGAAAAGTCCAGCACAGTGCCTGGTACATAGTAGGCACTTGGCAACTAATAATTATTAGTGTTTTGTTTTGCTTTTTTTTTCTTTTTGAGACAAGATCTCACTCTGTCGTCCAGGCTGGAGTGCAGTGACACGATCACGGCTCACTGCAACCTCCCCCTCCCGGGCTCAAGCCATCCTCCCACCTCAGCCTTCTGAGTAGCTGGGACCACTGGCATGTGCCAAAATGCCCGGCTAATTTTTTGTACTTTTGGTAGAGATGGGGTTTTGCCATGTTGTCCAGGTTGGTCTCGAACTCCTGGCCTCAAGTGATCCTCCCAGTCTGCCCACCTCAGCCTCCCAAAGGGCTGGAATTACAGGTGTGAGCCACTACGCCCATCCTATTCGTGTTATCCTTTAACCAATTTCAGTGTCCAAGTGGATTGAATCTTTACTCACCTTGAGAGACTCCCTGTACCTCGAGACCTTGGAACTTAGCCTTGGAGTTGTTTTTGTCAATCTCTCCCCTTTGTCTCTTCCTACTCTTCCTACCCCACAGAGATGGAAGGTAAGGTGGAGCTAGCCCAAGCTGTCTGCAGCTGGCCTGGTCCCCCGAGTGTCTTCTGATCCTGCTCCCCTAGCTATCCTCAGCTCACCTATCCAGAAGCCTCTCCTGTTGAGCCTCTTGGCTAATGCTGAGTCCTGGGTGTCTGTTGTCAAGTCCTTTGAAACAGCAGTTTGCTGCCACGCAGGACTTTCTGCAGGACTTATAGAGCAGGATCTATCCTCCTGCTCAGTCCCATACCCTCTCCCCTCTCCCCGTGTCCCTAGATGTCACAGCATCTGAGGGGAGGCCTTTTAGAACCAGTAAAAATCTCAAAGTAATAGGGATCTGTATGTTTAGAAACAGATATTTATAATGTTCTCAAAAAATGAACATCGTGGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAACATTTTGGGAAGCCAAGGCGGGTGGATCACTTCAGGTCAGCAGTTTGAGACCAGCCTGGCCAACACAGTGAAACCCCATCTCCGTCTCTACCAAAACTACAAAAATTAGCCAGGCATGGTGACAGGCACCTGTAATCCCAGCTATTTGAGAGGCTGAGATGGGAAAATCGCTTGCACCTGGGAGGCAGAGGCTGCAGTGAGCCGAGATGGTGCCACTGCACTCCAGCCTGGGTGACAGAGAGACTCTGTCTCAAACAACAACAACAACAACAAAAACATTGTTACCTGAAGATTGTCCAGTAAATCAAGTGAATGATGACATTTTAAAAATTAGCTTTAATGACTGGGCGCAGTAGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAAGTGGGCAGATCACGAGGTCAGGAGATGGAGACCATCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGCGTGTGGTGGCGCGCACCTGTAATCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCTTGAACCCGGGAGGTGGAGATTGCAGTGAGCTGAGTGCATGCCACCGCACTCCAGCCTGGCAACAGAGCGAGACTCCACCTCAAAAAAAAAAAAAAAAGCTTTATTCTAGCCGAAAGAATAGAATTAAGAATAGTAATAGCTGAAAGTGGTTTTTAACCCATTCTGAGCTTCAGAATGATCTGAGGAGCCTTTTGAAAAATAAAGACATTTGGACCCAGATCCAGTGAGTCTGTTTGTGGGGTGGGCCGGGCCTCTGTCTGTTCAGGGAGTAAGGGAGAACCCACCCCTGAGTAAAACTTTACAACGGCATTTCATCAGGGCACACTGGCCACCTGTCTGTGCGTTTTCATAGAATCCACAGTGACTTGCTCTCAGGGCCCTGATGGGTGATTCAGACCCCACATGGCTCTCCTCAGGGGGGTGAGGAGGAGAGGGTGGGGGAGTCAGGCTCTAGTTCCTGAATCAGACCAAGCCTCATTCTTGCTTTCCTTCCATCCCAGCCCTGTGGGCAGCTGACAGGCATCCCTCCCGCACCATCTGCCACCCATCCAGGCCCACCTTGAGCCTGTTTTCAAGGCAATCTGTGAGAAGCTCCTGAGTGAGAAACACTTCCTTACATATTCTGTTTAAAAAGAAAAGGTCTGTCCATGTGCATGGTGCATTTCATCAGTTGGAGACTCTTCTTTAAGACCTCAGGGGCATGGGGGGATTGTGAAAGATGCAGCTATGACAAGCACTCACAGAGGAGGAATTGGGGCACGGGGGACTCGGGGGTGTCTGGAGAGCAAGCTCTGGAGTCAGCTGAGCCCTTTGCCAGCAGGCACAGAGCCCTCTCTATGGCGGGCCAGGTGGGTGCCCTTCACCCGGCACCCTGTGAGAGTGCCATTGTGCCTGGCACAGAGGCAGCGCCCAGGAAATGTTTTTCCACCAAATGACTTTTTAAGTGAGCAGAGAAGAGGCATCTGCAGCGGGGCTGGGAAGAGGATAGGACAGAAGAGAAAAGAAAGGGAGAATAAGAACTGTGTGAACTCAAGGAAGCCCTATAGCTTTCCGCAGGGGCCCATTTCCTCAGGGTCATGGGGATGCAAAGAGATAATGAATGTTAAAGAATTCACCTGTCAAATGTGAGCTCACCTGTGCATTCTCTTCTCCATGAAGCATGGGAGCTTGCTGGTTCTGAGGTCTCTTCCTACTCCGGCCATCTTGGTGGTTCTACCTGAGTGCGTGGAGAGGGCTGGAGTTCGCAGCTGCTCTTCATCAAGGGCCCTGCCCCTGGGTGAATGGGAGACCCTGGCTTGCCGCAGCCATGATATCCCTTCTCTTCCTTCTGCCCAG
Seq C2 exon
GCATCTTTTGAAGTATCATTGGAGGCCCGAAGCTGTCCCAGCAGACACACGGAGCATGTGTTTGCCCTGCGGCCGGTGGGATTCCGGGACAGCCTGGAGGTGGGGGTCACCTACAACTGCACGTGCGGCTGCAGCGTGGGGCTGGAACCCAACAGCGCCAGGTGCAACGGGAGCGGGACCTATGTCTGCGGCCTGTGTGAGTGCAGCCCCGGCTACCTGGGCACCAGGTGCGAGTGCCAGGATGGGGAGAACCAGAGCGTGTACCAGAACCTGTGCCGGGAGGCAGAGGGCAAGCCACTGTGCAGCGGGCGTGGGGACTGCAGCTGCAACCAGTGCTCCTGCTTCGAGAGCGAGTTTGGCAAGATCTATGGGCCTTTCTGTGAGTGCGACAACTTCTCCTGTGCCAGGAACAAGGGAGTCCTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082781-ITGB5:NM_002213:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PD(2.1=6.5),PF0036213=Integrin_beta=FE(48.9=100)
A:
NA
C2:
PF0036213=Integrin_beta=PD(1.8=1.4),PF0036213=Integrin_beta=WD(100=29.9),PF079748=EGF_2=WD(100=20.1),PF079748=EGF_2=WD(100=27.1),PF079748=EGF_2=PU(29.0=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)