MmuINT0084194 @ mm9
Intron Retention
Gene
ENSMUSG00000022817 | Itgb5
Description
integrin beta 5 [Source:MGI Symbol;Acc:MGI:96614]
Coordinates
chr16:33910551-33920300:+
Coord C1 exon
chr16:33910551-33910685
Coord A exon
chr16:33910686-33919870
Coord C2 exon
chr16:33919871-33920300
Length
9185 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
TCTTCTCTTTCCACCCCCAGGCA
3' ss Score
11.46
Exon sequences
Seq C1 exon
AGCATCCGGGCTAAAGTGGAGCTGTCAGTGTGGGATCAGCCAGAAGACCTTAATCTCTTCTTCACTGCCACCTGCCAAGATGGCATATCTTACCCTGGTCAGAGGAAGTGTGAGGGTCTGAAGATTGGGGACACG
Seq A exon
GTAAGTGTTCCCTCCTAGTTTTTAAGAGTTCTTGTTCGCTTGGGTAATTATTCTCTGAATCTGACAATTTTGTAGCTCCCTGGAGTCCTCTAGAGACGTGTGCTCTGCCTTCTAGTCCAGAATGCTTTCCAAGCTACTGTGCATGTTGTGTGCAAAGTCTTAGCAGGATCGGGTTCGGAGCTCCAGTCCACAGACCCCCTCAGTGCACTGCCAGCTGAGGGCTCCTCAGTGACACTGGGCCCTTGGTGCTTTAGTCATTATCGTTTTTAGCTTGACAGGGATCTAGTCAGGTGGGAGAATATTGACAGGAGTCTAGGAGACTTGGCTTCTATTCCTCATCTTTTCCATGCATCTCCTTTTATTTGATGAGACTAAGGGGTATCCTGCAGCCGTGGAGGGAACAGATGCCTGTCAGATAACGGATATAAATGATGTATGTAAAGGTTAAGATGCAATGGTGTGAAGGCATAAGCGGGGCGTGGCAGCATGTGATGAGTCACGGTGAAAAGATTGTTTTTGACACTAGTCTGATCTACAGAGGGGAAAGATAAAAGGTGTAGCAGTGCCGGGCAGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGACGGATTTCTGAGTTGGAGGCCAGCCTTGTCTACAGAGTGGGTTCCAGGACAACCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAACAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAGGTGTAACAGTGATGTCAAACAAAGATGGCAAAGGAAAGCACTGGGGAGTGGTGACACCACTGTGCCATGGCAACACAGGCTATTGATGGTGATGGGAGGATTGTCCACACACCTTCTGGAGGTCTGCTGCCAGAAGCAGACAGACTATAGAGACCATCCCAATGGCATTTACAATTTTTTCTTTTCTTTATTTTTAGGATTTATGTTTTTTATTACTATTTTATTAATTAATACCACCGTCCTCTTCCATCTCCTTAGTTAATTTTTAAAAGTATTTATTTATTTTTATGTGCATTGGGGTTTTGCCTGCAGCATGTCTGTGTGAGGATGTCAGATCCTCTGGAACTGGAGTTCCAAATAGTTTTGAGCTGTCATGTGGGTGCTGGAAATTGAACCCTTTGTCCTCTGGAAGAGCAGCCAATGCTCTTAACTATGGAGCTATTTCTCCAGCCCCATGTTTTATTATTTTATTATTTTTAATTATGCTAAGTATGTACATATGAGTACAGGTGCCTGCAGAGGCTCTGTCCTGGAGTTACAGGTGATAGTGAGTTACCTGACATGCGTGCTGGGAATCGAACCCTCGTCTTCTGGAGGAGTGGTGCATGCTTTTAACAACTGAGCCATCCATTTCTTCAGCCCCCTCCAATGAGCTTTGGTGACCATTCCTTTCCTTAGAAAATAGAGTGAGAGAAAGCTTCCTTGCACACTTCAGAGTATCTGAGCATCTTCTGGGTACTACTGCCAGCTAAGGTGGCAATAACCCTGTATTTCCTGCCTTAGGAAGACACTGGAGTATCTGCTTACGTCTAGCTGGGACATTCTAGCCTCTTCTCTCTTCCTTCCTGTTTTCCATGTTAAGTGACCCTTCACCCACTTAACACCACGCAGGGAACCGGTCGTACCTTTTCACGATCCTACAGTGGCACCCTACCGCCAAATGAGGCAGTTTAAATCCAGTCTGGAAGGTGAGACTGTAGGGAGCCCTAAAACTTGAATAATTGTCAAAAGTTGTACTTGTATTCTTTAGATAAATTATAGTGATTTCTTTTACCAAAAAAGATTTATTTATTTTATATGTGAGTATACTGTCACTGTCTTGAGACACACCAGAAGTGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTCGTTGCTGGAAATTGAACTCAGGACCGCTGGAAGAACAGTTGATGTTCTTAAGTGCTAAGCCATCTCTCCAGTTCCACTAGTGATTTTTTTAAACTTTTTTTTATTTTTAATTTATTTTTTACACTCCAAATTCCATTCCCCACCCCCATGATTTTTTTTTTTAATCAAGATGATTTAAGAAAAAAAACAGAAGTCTTGTTGAAGTCGTGGAGTTTAAAGAGTTAGTTGTGGCTGGAGAGATGGCTTAGGGTTGCTGCCAAGCCTGATGATGACCCGAGTTTGATCTCTGGAACCACAACAGTGGAAGAAAAGACCTGACTCCCACAAGCTGTTCTCAGACTCCACACATGTGCAGTGCTGTGTGCATCCCATGCCCAAATTAAACAACAAATAAATGCAAGGACAAAGCGGAACAGGAAGTTCTGGAGATGGCAGGAGGTAGCAGCCATAAGTAGGAAAAGAACACGTGAGCAAATTCTATAGATCTTATCTGCATGGGGTGTGTGGAGCGGTGACACTGGGCATCAATGGTCAGGCAGATTTATGAACATGCTTCCTCTAAGGGATGGCCTGACAGAGGCTTGGACATATATTGTCTGCCTGTGTTTATGTGCCATTGGCAGGCCTGTTTATCAAATACGGGAAAGGTTACAGAGCTGGAACAAACAGCCCATCTGATAAAACAGGAAAGCTAAGACTTAAAAATAGTTTTAAAAACTAGGTTATGATTAATTAGTTAATTATAATTAGTATCTTATTTAGTTTAGAGTATTAATAGGACAAAGGGTATGTGCTCTGGTAGTATTTTTGGTTGTTTTGATGATAGGATCTCATATGCACAGTGAGTTATAAGCTTACCTGGGCTACAGAGTGAGACTGGGCCTAAAAAGAAAACAAACAAACAAACAATGAATGGTGTGCTAAGGGTGGGTGAGATGGCCCAGAGAGTCAAAACCCTTGTTGCTGCACCTGGTGGACCACTTGATTTCAGTCCCTGGGACTCACATTGTGAAAGGAGAGAACCCACTCTGAAAATTGTCTTCTGACCTGCGCATTGTGCCACGCCACCGGACCCTTTACTCCACCACAATAAGAAATGTAATATAGAAAGCTTAAGCGTCTTAAGTGGCGTTGCCGCTGGGGCTGTATCATAGATCTTTGGAACCCCAGAGGTAATGGCATTTCTCTTCTTTTCGGGTCACACTGCTTGTTGTTGAGTCTTTTTAGAAACTTAAGGGACAAGCGAATGTCTCTATGTATTGGTTAGGAAAAAACAGCAAGAAAACTGGGGCTTGTTGAAAATGCCACCTTGAGGCAGAGTGGATCTGAGGTCTTTAGGTAAATGTAGGGAAATTGCAAGGACCTTATGTTTGGGGTCCTTCATGGAATACAGAGAAGTTACATTCCACCTCATGATGGACCGGAAACAGACTGAACAGCGAACATTTCTCTGTTCCTCTCTTAGTTTCCTGCGAGGAAGACATTGTTACCCGTGTGACAGACCAGGTAATCGAATACAGGATTAATGAAATGAAAGCACAGAGCTAAGGCTCCCTGTTCTGTAGCACGCACCCGATACCACCTGACGCCCATGACCCTTCCACCATAGACATTTCAAAAACCATGTGGGACAGAGTAGTGATGGACCACAGCCTGCTCAGAGAGCAGAGCCTCTGTGTCCTTGTCGTTGAGTTCACATAGTCATCAACATTGGTGAGGACAGAATACTGTACTGCTGATGGACAGCTGGGGCCTCTAGGATGGGAGTGGCTTGCCTAAACTCACCCAGATTAAGTCCTATTTTAATCACAGTCTCCCTGTCACAGGGAGCCTAGTTAGCCACCTCTATACAGGAACTGTATAGTATACTGTATACTGTAAAGTGTGCCCAGTTGGGGCTTTGCTACTATTTCCTTTCCTTTCCTTCCCCTTCCCCTTCCCCTTCCCCTTCCCCTTCCCCTTCCCCTTCCCCTTCCCTTTCTTTTCTTTTTAACATTGATTTATTTATTTTATGTGTGTTGGGTGTCAGATCATGTGACACCTTGCAAGAGTGGGTTCTGTTCCACTGTATGGGTCCCAAAATTTGAATTCAGGTCCTCAGGCTAAACAGCAAGCGCCTTTACCCACTGAGCCATCTAGCCAGCCCCTGGTTTCTGTCTCTTCCAGCAGCTTTGCAGTGAACTATATTTTTCCATGTTAATGTGTGGGCTTAAAACCTGGGGCTCGAAGAGGAGCCTGAGACACTGGCCCCAGGTCCCACTGCCGGTGAGCAGCAGGCAGCAGTAAGACCCAAGTCACTAGCAACGCCACAGCCCAGACCTTCTCTGTAGGCCTCAGGAACAGTGTAGTGAAAGCTTCAGGGACTTGGGGAGGAATCATCATTTCTCCCCCCCACTTGTACACAGCTCTTTTTTGTTTGGCCGGGAGAGCTTAGGAAATCAGGGAGAAAAAAAAAAAAAATTTAAATGGAAACTTTCCTCAGCATTGAGACGTCTCTATTGTAACAGGATGATTTTAGTGTTTTCACCACCGAAGTTGCCTTTGGCCCAACTTTAGGTTCCAGTGGCCATAGCCCTGTGGAAATCGAAGCAGGTCCTCAGGCAAGCCTCTCTGCTGGCCCTTTGTTCTCTCTCTGTACTAGTATTGTCCCAGTGTCCACGGGCTGCAGTCACACTTCCTCTCTGGTTAGAGCTGTGTGGGGTTTGTTGTCTGGGTGTGGATGTCTGCACAGAGGCACTCTTCTGGGCTGGGTGTGTCACTGTCCACCAGGGTTGTGCAGATCATGAGAGTAAGGCTTTCTGGACTGACTGAGTCCGGTGCTATGACATGGGAGGTCTGAAGAGTAAGAATTTTAAGGGGCTAGAGAGATGGGTTAAGGTTAAGGGTGCCTACTGCTCCTGTAGAGGACCCAAGTTCAGCCCCTAGCACCTATGTTGGGTGGCTTACAACTGCCCATAACTCCTGCTCCTCCTCAGTGCTTATCACAGGGATGGATGTCCCGGCTTGCTGGCGACCGTGCTGGTGACTGAGATCTACTGTTTGGTAAATGTTTATGCGCTGGTGATCTGCTCGGCAGGCTGCAAAGATGGGGAGACAGCGTCACTAGGCAGAGTGCTTATCCAAGTGGATCTTCCCTGTAACCAAGGAAGGAGGGACTGGCAAAGAAGAGGAGTAGAGCTGAGACCCAGAGGGACAGTGGAGTCTCTCTCTGGTAGGAACCCTGGAGAATAAGGCATTGATTGAGAGAATTTGCTAGGGAGTGAAGAGCACCGCCCTTTGTGGCCAGAGAGGGAGGGGTCAGAGAGCTGCTGAAACCGATGGTTGTGGGGTTGAGAGGAATAGGTTGGGGACTAAGGAATAATGGAAATTGATTTTTTGAAAGTTACACGTAAGTTAGGCATGGAGCTCACACCTTTCATCCCAGCACTCAGGGGGCAGAAGCAGGTGAATGAATCTCTGAGTTCAAGACAAGCTTAAGGGCCTGGCCACTCCCTGGCAGAAGGTTCTTTCCTGGGTGTCACAAGTTAGGATAAGGGACATGTTAGGGAATGGTGACCAAAGGCTCTGGGACTCTAGGGGTTAGACAGTTCAGCTGTCGTTGGGTACTTCAGGGACTAGTCTGGGGACAACAGTGGAGACCAAGGTGGCCCTGGGACAGATCTCACTTTGAGTAATAGCAGCTTCCTGAGAAGGTGAGGGAGAGGCAGGCAGTACCTCGTGGTCGTTTCCAAACAGAGGTGGTCTTGTGACTAAGAAGCAGGAGACTTGGCCGTAGGTGAAACGAGGATGTCCTGAAAGAGAAACCATCCTTATATTAAAGCCCAGAGCCTTGAATCTGGTGAGATTCCCTTCTCTATGTTCTTGGGGTAGTCCTCTAACGGCCCCCACCCTGTCCATCCACCAGCAAGCTGGTCTGAGTTGACCTATACCCCAGGAACTTGTGTTCTAAAGAACTAACATTGACAAATTAGTATGCAAGTGGCTGGCTGTCCACCGTGCACAAAGGGCCCAGTGAACCACCGTTAGAGCCTTCTCACGGGATACATGCCAACACACACACACACACACACACACACACACACACACACACACACACACACTGCTCTTACCCACTCCTCTGGGCCCTGGACTTTGGGCCCTCCCTCAGCTCTTTGTTTTATTAAGAGCTGAGTGGACTTGGCACCTGCAGAACCCCAGGGTTGGGGAGTTTGTGTGGGGTCTGGGCACCTCCCCTTTTGAAAGAGTGGGCTCCCATTGGAGAACCAGAATCATCCCAATGAAGTTGAGTCACTAGTCTGGCCAGGATGCCTGCAGCAGCTGTGACCTTCCTCTAGACTGAGTCTTGGAATGGGAACCTGGAAAGGCTCCAGGAGCCGGGCAGCCCTCGGTATCAGTGCTTATCCTGAGACCTCGGCCACCAAGGGAGGGAAGCCAAGGAATGAATCTCCAGGGCCTTCTAGCCTCTCTGGGTTCATTGCTAATCCAGTAGGAAAACAGAATTGTCACGGGGGATGGGGTGGTGAGCAACACTGACCCACTTGCTGTCCCCGACGGACAGGCTTTTGATAGCATTCCTATGTCCCGTGGGAGCCAAGAGCCATTGGCTGACACAGACATTGCCTCTCTCTGGCCATCAGACAGTGGACTGCAGGGCAGGCAAATAGCACCTCCACTGGATAGAAGCGTTGGCCAAGGAGGTCCTGGGACCCTACTGGGAAGCCACGCCCTCTTGACTTCTCAGCCAAGCAGTGTCCATGTCTCAGCTCCAACTCACAGGCTCCTAACACTTCCACTTATCCTGGCATATGTGGGCAAGGCTGAAGGGTGTGTTTCTCTCTGTGTGTCTCCCCCCTCCCTTCCCTTCCCCCTCTCCTTAATTCCTTACTTTCTCCCTTGACAAAGGGGGATATGCATGGGGAAGGTTGTGTTCACTAGAGTCTCATAGCGGAGTGCCTTTGGCTCTGGCGGCAGGCCATTCCTTTGCAGTTTATTGCATCCAGCTCTTCATTTCCCAGGCATGGAAAGCGGCAGAAAGTAGCAACTTCCTGCAGGTCACAGGGAAGGGATGGCATCAGGCACTCAAAGGCTCTGCTTCCCTGCATTCTTCATGGCCCCATAGATAATTTTGCTGAGGCTCAGCCCTTGAAACCCTGCCTGTGTGCAAGCTCAGCACATTCCTAGTCCAAGGCAGAGAATTTGGAGAAGTCTACAGCCGTCGCTTTGGGGCTCATCACTGTGCTGTCTCTGGATTGAGTCAGGCTGTCATCTCTCTACCTAGTTGTTGGGTTTTTTGTTTGTTTGTCTTTTGAGACAGGGTTTTCTATATCTAGCCTTGGCTGTGCTGGAACTAGCTATATAAACCATGCTGGCCTCAAACTTACAGAAATCCTCGCCTGCCTCTGCCTTCCAAGTGCTGGAGTTAAAGGTGTGCACCGCCACGGCCAAGCTTCCTACCCTGATCTGTGCATGAACATCTGCTCTGTTCCCTTGCTAGGAGGTGATGTGCTAGGAGGATGCAGGTCTGTTCTAGAAGAGCACAACCCCCACTCACTATATAAACAGACAAATTCACAGCCCCTCTGACATCATTGCCTCCCTTGAAGTGAGGACAGCTGTTCAAAGCTGTTAATGGTTGGTTACAGGGGACTGCCAGCCCATTCTGAAGCCCAGAATGATCTGAGGAGTCTTGAGAAATAAAGACATCACCCGGATATAAGGGACCACTTGGAGAAGTGGCCAGGCATGTCTGCCAGAGGAAGGGATCCCCACTTCCAGAGGGGTGCTTCTCAATGAGGTTCCGTCACCATTCACCTGCCTGTCTGCGTGTCTGTGGCTTGTTCACCTCTGCTCATCCCGTTCCCCACACAGCACTTTCTTCTGAGGAGGGAGAGGCAGAGTAGATATGGTGTCATGTTCTGACTCCCGGAAGACTCAAAGCGAGCTTCCTTTCCCCTCCAGACTTGTGAGCAGCTGACAGACAAGGTGTTGTCATCTGCCACCCTGCTAGGTCTGCCTTGCTGTCTGCCTCCATGGTAGCCTGTAAGAAACTCTAAAGTTAGAAACTCTTCCCTAAATCAGCCAATCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTTCCTTCCTTCCTTCCTCCCAAGTGCCCCTGTGTGTGATGGTTATTCAGGCAGTGAGTATCCCTTACAGCTTCAGAACTGTGGGCTGATTGGGCAACATACAGCTGTGAGAGCCATCCTTGCAGGGCACTGGGGCTGGGGCATGAGAGAGGACATTCAGGCCTCACCCTTCCCTTCCCCGACAGAGAAGACCTCTTTACTGTGGTCAGGTGGCTGCTCTTTGCCCCTGCACCTCATGCCAGGTGGTGCCACCATACCTCAGCATCTAGCCATGCCTGGCGTAGACAGTAAATGCTGGTTAAATGAATGACTTCTGAGATAGGAGGAGAGATGTGCACAGCGGTGGGGATGGACGAGAATGGGATACAAGTAGAGATAAGGAGGAGAGCAAGGACCAGGTAAAGCTCACTCCTCATGCATTTCTTCAGAGCCCCTCTCCTCAGGGTCTCAAAGATGATGAGAGTGGATGGTAAAGACCCATCCCCAGGGGCTGGAGAGAGGGCTCAGCAGTTAAGAGCACTGGCTGTTCTTCCAGAGGACCCAGATTCAATTCCCAGCACCTGAATGGCAGCTCACAACTATCTATAACCCCAGTTCCAGGGGATCTGATGCCCTCAGTCAGTCAGTCAGACAGACAGACAGACTAAACATGAATGCACATGAAATAAAAAGAAATATTTTTTTTTTTTAAAGAGACCCATGCCTGGCCTGGAGAGATGGGTCAGCGGTTAAGAACACTGACTGCTCTTCTAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAATAAGTTCCAATGCCCTCTTCTGGTGTGTCTGAAGACAGAACAGTGTTCTCATATGAACATTAGCATAACCAATTGCTCTTTTCCATAAAGTACCTGGGGTTGTTGACTGTTCCTACCGGGATTCCACCTGTATGCTGGACTAGATAATATTCATAAGGGGTATATCTAGCCATGTCCCCTGATGGGTGGGAGCCCTGGCTTGCTGTGGCTATGATGTCTCTTCTCTTTCCACCCCCAG
Seq C2 exon
GCATCCTTTGAAGTGTCCGTGGAGGCTCGGAGCTGCCCCGGCAGACAAGCAGCACAGTCTTTCACCTTGAGGCCCGTGGGCTTCCGGGACAGTCTGCAGGTGGAAGTCGCCTACAATTGCACATGCGGCTGTAGCACGGGGCTGGAGCCCAACAGTGCCAGATGCAGTGGGAATGGAACATACACCTGTGGGCTGTGCGAGTGTGACCCCGGCTACCTGGGCACTAGGTGCGAGTGCCAGGAGGGGGAGAACCAGAGCGGGTACCAGAACCTGTGCCGGGAGGCAGAGGGCAAGCCTCTGTGCAGCGGGCGTGGAGAGTGTAGCTGCAACCAGTGCTCCTGCTTCGAGAGTGAGTTCGGGAGGATCTACGGACCTTTCTGCGAGTGTGACAGCTTTTCCTGTGCCAGAAACAAGGGCGTCCTATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022817-Itgb5:NM_010580:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(10.3=100)
A:
NA
C2:
PF0036213=Integrin_beta=PD(9.6=28.5),PF079748=EGF_2=WD(100=25.0),PF079748=EGF_2=PU(32.3=6.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: