RnoINT0076409 @ rn6
Intron Retention
Gene
ENSRNOG00000001795 | Itgb5
Description
integrin subunit beta 5 [Source:RGD Symbol;Acc:628869]
Coordinates
chr11:70086253-70096544:-
Coord C1 exon
chr11:70096410-70096544
Coord A exon
chr11:70086683-70096409
Coord C2 exon
chr11:70086253-70086682
Length
9727 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
TCTTCTCCTTCTACCCCCAGGCG
3' ss Score
11.78
Exon sequences
Seq C1 exon
AGCATCCGGGCTAAAGTGGAGCTGTCGGTCTGGGATCAGCCGGAAGACCTTAATCTCTTCTTCACTGCTACGTGCCAAGATGGCCTATCCTACCCTGGTCAGAGGAAGTGTGAGGGTCTGAAGATCGGGGACACG
Seq A exon
GTAAGTGGTCACTCTAGTTCATAAGAGTTCTTGTTCGCTTGGGTAATTATTCTCTGAATCTAAATTTTGTAGCTTCCTGGAGTTCTCTAGGGACGTGTGTTGTGCCTTCTAGTCCAGCATCCTTTCTAAGCTGCTGTGCACTTTGTGTGCAAAGTCTTAGGAGGACCGGTATGGAACTCAGTCCACAGAGCCCTCAGCGCACTGCCTGCTGAGGGGTCCTCAGTGGCACTGGGCCTTGGTGCTTTAGCCATTGTTGTTTTAGCTTGATCCAGTCAGGGAAGAATATTGACAGGAATCTAGGGGACTTGACTTCTATTCCTCATCCATTTGGGAAAAGACGGAGATAGCCCTCCGTGCATCTCATCTTATTCGATGAGTCTGTGGAGTAGCCCGCAGCCATGGAGGGAATACGGGCCTGTCAGAGAGCAGATATAAATGACAGATGTAAAGGTGAAGATACAATGATGAGTTGTCATTAGCTGGGCGTGGCGGCCCATGACAGTCAGGGTACTAGGATTGTTTTTGACACTAGTCTCACCTACATAGGGGGACCTCGTCTTCCAAAAGAATAAAAGATGTAGCAGTGATGCCAAACAAAAGGTTGGAAAGGAAAGCAAGGGGGAGGGTTTATGAATGGTGACACCACCATGCCCTGGTAACACAGGCTCTTGATGGTGATTGGAGGATCGTGCACCACCTTCTGGAGGCTTCCTGTTAGACACAGACAGACTATAACGACCATCCCAATATCATTTTAATTTTTTTCTTTTATTTACTTAATTTAGGATTCACGTTTTCTTATTAATTTATTAATACCACCTTCCTCTTTCATCCCTCCCATTATTTATTTATTTTTTTAAACATTTGTTTATTTTTATGTGCATTGGTGTTTCGCCTACTTTATGTCTGTGTGAGGGTGTCAGATCCTCTGGAACTGGAGTTACAAACAGTTTCGAGCTGTCACGTGGTTGCTGGGAATTGAACCCAGGTCCTCTGGAAGAGCAGCCAATGCTCTTCACCACTGAGCCATCTCTCTTGCCCCGTGTTTTACTATTTTTAATTATGCTAAGTATATACACGTGAGTGCAGGTGCCTGCAGAGGCTCTGGCCTGGAGCTGGAGTTATAGGTGGTAGTGAGTCACCTGACATGCGTGCTGGGAACGGAACTCTTGTTCTCTGGAGGAGTGGTGCATGCTTTTAACAACTGAGCCATCCATTTCTTCAGCCCCCTCCAATGAGCTTTGGTGACCATTCCTTTCCTTAGAAAATGGAGTGAGGGAAAGCTTCCTTGAGTACTTCAGAGTATCTGAGCATCTTCTGGGCACTACTGCCAACTAAGGTGGCAATAAGCCAGCATCCCCCTGCCTCAGGAAGACACGGGAATATCTGCTTACCTCTAGACAGGACATTCTAGCCTCTTCTCCCTTCCTCCCTGTTCTCCATGTTAAGTGGTCCTTCACCCACTTAACACCACACAAGTAACTGGTCCCACCTTTTCACAATCCTCCAATCACCCTACCACCAAATGAGGCAGTTCCAGTCTGGAAGGTGAGACTGTGGGGAGCCCTAATGACTAGGAAGCCAGTGGTTCTCCCAGACAGATTTCCCCAAATATATTTCGCTTTTACCAACTTGAAAAGGTCAGTTTTTCATTACAGCCATCACCAACAATTGTCTATATGACAGTTAACTCAGAAGGCGCTCAACGAACAAAGTGACATGCTTGAAACTAAATTCCCACTCCATCTTCTGTTTGTGCAAATAGAAGATGGTTTCAGTGCTTAAATTCCTGTGGACACAATAGAAATGGTGAAACTCCCTACCTTCAGCGTATTAGTATACAATTGTATCAAGTGTTTCTGGAACCATTAAAGAGACTCTTTCAATAAAACTTGAATAATTGTTAAACGTTGTACTTACATTCTTTAGATAAATTATAGTTACTTCTCTTTTTAAAAAGTTTATTTTATATATGTGAATACATTGTCACTGTCTTTAGACATACTAAAAGAGGGCATCAGATCCCATTATAGATGGTTGTGAGCCACCATGTGTTTGCTGGGAATTGAACTCAGGACCTCCGGAAGAGCAGTCAGTGCTCTTAACCACTAAGTCATCTTTCCAGCCCCTATAGTGATTTATAAATCAAGATAATTTAAGCAAAAACAGAAGTCTTGCTGCAGTCGTGGAGTTTAAAGAGATACTGCGGATGGGGAGATGGTGTAGGTTTGCTGCTAAGCCCGATGATGACCCTGGAACCCACATAGTGGAAGGAAAGAACTGACTCCCACAAACTGTCCTCAGACGTCCACACATGTGCAGTGCCGTGTGCACTCCGTGCCCAAAGTAAATAACAAATGTAAGGGCAAAGCCGAACAGGAAGTTCTGGGAATGGCAGGAGGTCGGCAGCCATAAATAGTAAAAGGACACGTGAGCAAATTCTATAGATCTTATCTGCATGGGATGTGTGGTGCGGTGACACTGGGCTCAGTGGGCAGGCAGATTTATGAATGTGCTTCCTATAAGGGATGGCTTGACAGAGACTTGGACGTATATTGTCGGCCTGTGTTTGTATGTCATGGGCAGGCCTGTTTATCAAATACAGAAAGGTCACAGAGCTGGAGCAAACAGCCTAGCTTGTAAATCAGGGAGGCTAAGATTTAAAAATAGTTTTTAAAACTAGGTTATGATTAATTAGTTAATTATAATTAGTATGTTATATTTAGTTTAGAGTATTAATAAGAGAGAGGGAGTGTGCTCTGATAGTATTTTTGGTTGGTTGTTTTTTACAATAGAATCTCATGTGCGCAGGGAGTTCTGGGCTAACCTGGGCTATATAGTTAGACTCTGTCTAAAAAAAAAAAAACCAAGTGCTAAGGGTGGGTGAGACGGCTCAGCGAGTCAAAGCACTTGTTGCCAAGCCTGATGGACCAGTTCATTCCCTGGGACTCACGGTGTGGAAGGAGAAAACCCACTCTCCAAATTGTCTTCTGATCTGTGCGTTGTGCCATGCCACTGGGCCCCTTACTCCACCCCAGTAAAGACATGTGATATAAAAAGCTTAAGCATCTTATGTGGTGTGCCCACCGGGGCTGTGCCGGCCGGGGCTGTGTTAGCAGAGGATCATTGGGAATGTTTGGTAATGGTACCACTCTTCTCTTCAGGCCACACTGCTTGTGGTAGAGTCTTCTTAGAAGCGAGAGTGACAAGCTATGAATAGGTTAGGAAAAAGCAAGAGAACGGGCCTGTTGAAAATGCCACCTTGAGGCAGAATGGATTGAAAGTCTGTTCATGCTGCCTTAAACACATGTAGGGAAACTGCAAGGATCTTACTTTGGGGTCCTTCACAGAATACAGAGAGGATACATTTTACCCCATGATGGACCGGAAGCAGACTGGACAGTGAGCATTTCTCTGTTCCCCTCTTAGTTTCCTGCGAGGAAGACACTGTTACCTGTGTGACAGACTAGGGAATCTAATACAGAATTACCGAAATGAAAGCACAGAGCCTAAGGCTTCCTGTTCTGTAGCCCGCACCTAACTCCCACGACCCTTCCACCGCATGCATTTCACATGGCAAGGATTGGGACATCGTGGTGATGGGATGCAGGCTTCACCAGAGAGCGGTCCCTCCCTCTGTGTCATTGTCATGGAGTTCACAGCAAATTGGGTGGGGACAGAATAGTGCACTGGTGGGCAGCCAGGGACTCTAGGATGGTAGTAGGCTTGCCCAAGCTCACCCAGATGAACCCTCCCATTGATCATAGCCTTCCTGTCCCAGGGAGCCATAGCCACCTATATGTAGGAACTTACAGTGTGCCCACTTGGTGCTTTACTACTAATTTCTTTTCTTTTCTTTTCTTTTTTATATTTATTTTATATGTGTGTTGAGTGTGGGGGTCATATGACAACTTGCAAAAGTAGGTTCTGTTCCACTGTATGGGACCCCACATTTGGACTCAGGCCCTTAGGCTGGACAGCAAGTGCTTTTACCCACTGAGCCATCTAGCCAGCCCCTGGCTTCTGTCTCTTCCAGCAGCTTTGCAGTTAACTCTAGTTCTCCATGTTAACGCAGTGGCCTCAAAACCTGGGGCTCAAAGAGGAGCCTGAGAAACTGGCCCCAGGTCCCACTGGCAGTGAGCAGCAGGCAGCAGGACCCAAATCACTGATGGTGCCACGGCCCAGTCAGGCACAGTGTAGTCCAAGGCTTGGGGCAGAGTCATTATCGTTTACGCCACAACTCGCTTGTGTACGGCTCTCATTTGTTTGTGTGGGAATCTGATGTCTGGAAATGAGAGAAAAAAAAAAAAAGACTTTAAATGGAAACTTTCCTTGGCATCAGTTGTAACAGGATGGTTTTTAGCACATTCGAAAACATAATAATGACAGTGTTCACACCTCCAAAGTTGCTTTTGGCCCATCTTTGGGATCCAGTAGCCATAGCCCTCTGGAAATTGTAGCAGGTCCTCGGGCAAGCCTCTCCTCGCTGGCCCTTTGTCCTCTCTCTGTCCAAGTATTGTCGCAATGTCCACGGGCCACACACAGTCACATGGCCTCTCTGGCTAGAGCTGTGTGGGGTTTGTTGTCTGGATGTGGACATCGGCACAGAGCCACTCTTTCTCCAGGCCGGGTGTGTCACTGTCCACCAGGGTCATGCAGATCATGAGAGCAGGACTTTCTGGACTGGGTGAAACCGGTGCAATGACATATGAGGTCTGAAGATGAAGAATTTTAAGGGGCGGGTTGGAGTGATGGCTCATGGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACAGGGTGGCTCACAACCATCTGTAATGGGATCAGATGCTCTCTTCTGGTGTGGCTGAAGACAGTTGCAGTGTACTTGCATATATAAAATGAATGAATTTTTTTCTTTAAAGAATTTTAAGGGGCTAGAGAGATAGATTACCGTTAAGGGTGCATACCCAAGTAGAGGACCCAAGTCCAGTCGCTATCACCTATGTTGGGTGGCTTACAACTGCCCATCTTCTGGACTCTGAGAGAACCTGCCTCACATATTACACACCCACACACAGAAGCACATACATACACATAATTCAATTAATTAATTTAGTGTTTTTCAGGGCAAGGTGTCTCTGTCCTGGAACTTGCTTTGTAGGCCAGGCTGGCCTCAAACTCAGAGAGTCACCTGCTTCTGCCTCCTGAGTGCTTGGACTAAAGGTGTGAGCCCATGCCTGACTTACACATAACTTTAAAAAATATATGTATAAAGGTTTAAGATAGTAATAATGAGTGTAAAACTAAGCTCAGGGTCTTCTGAATAGAAATCCAGGAAAGAGAGAAGGGTTGGGAGGAGGGAGAGAGGAAGAGGGGGGGAGGGGGGAGGGAGAGAGAAAGAGAGTCAGAGACAGAGACAGAGTCAAGAGACAGACAGAGACAGACAGAGAGAGAGAGAGAGACAGAGACACAGAGACACAGACAGAGACAGACAGAGAGAGAGAGACAGAGACACAGAGGCACAGACAGAGACAGACAGAGAGAGAGAGAGAGACAGAGACACAGACAGAGACAGACAGAGAGTGACAGAGAGCCCCGTCCTTACTGGTGGCCTCGATTCTTTTTTACTGGGATGTGCTTGTGTTTGGGAGAGTCCTGCACTTCCTCCATTTTGTGAGACAGAGGGAGCACACTTTCAAACAACACCTGTGTGATGCTCCAAAGAGGCCCCTGAAGGCTTGTACTCTTCCCTTCTTCCTCTTGACTGAACTGTAATCTCCCTCGAGTCTGAGTTTTGGCAGCCAGGTGTGCCACCCAGTGCTTAACACGGGGATGTCCCAACTTGCTGGCGACTGTGCTGAGATCTACTGTCCGGTGAATGCTTATGAGCTGGTGTTCTGCTCACCAGGCTGCAGTCCCAGTAGATGGAGTGCTTATACAAGTGGATCTTCCCTGTAGCCAAGGAAGAACGGTCTGGCAAAGAAGAGGAGTAGGCTATTAGAGCTGAGACCCAGAGGGACAGTGGAGTCTCTCCTAGGTGGGAACCCTGGAGAATAAGGCTAGAAGAAGGTGATGAGTGAGATGAATTCGCTAGGGAGTGAAAATCGCCGCCCTTTGTGGCCAGGGAGGGAGAGGTCAGAGAGCTTCGGAGATTGATGGTTGTGGAATTGAGAGGAATAGTTTGGGGACTAAGAAACAATAGCTGGCCCACACTAGTAGGACGTGTGTGTCAAACTTAAGACCCTGGCCACTCCTTGGCAGTAGGCTTCTTTTCTGGGTGTCACAAGTTAGAAAAGATAAGGGATGTGTTAGGGAATGGTGACCAAAGGCTCTGGGTCTCTAGGAAAACAGGAAAGCAGTTCAGCTGTCAGTGGGTACTTCAGGGGACAACAGTGGAGGCTCTTATGGCCAAGGCAGCACTGGAACAGTTGGACTTAGTAGATCTCACTTCCTGTAATAATGGCAGCTTCTTGTGAAGGTGAGGGAGAGGCAAGCGGGGCCTTGTGGTCGTTTCCAAACAGAGGTGGTTTTGTGACTAAGAAACAGGAGACTTGGCAGTAGGTAAAACAAGGATGTCCTGAAAGAGAAGCCATCCTCAAATGAAAGCCTGAAGCCTTGAGTCTGGTGAGATTCCCACTCTAAGTTCTTAGGTGGCCCTCTAAGGACCCCCATCCATTAATCACCAGCCCCGCTGAGTTGACCTACACCCCAGGAGCTTGCATTCTTAAGAACTAACCTTGACACATCAGTACACAAGTGGCTGGCTGTCCAGCTAACATTAGCACCCCACACAAAGGGCCCAGTGAGCCTCTGTTAGAGCCTTCTCACGGCATACATGCCAACACGCACGCACGCACGCACGCACGCACGCACCACACACGCGCCGCACACACCCCTGCTCTTGTCCACTCTTCTGGACCTTGACCTTTGGGCCTTCCTCACCTCTTTGTTTTATTGAGAGCTGGGTGGACTTGGCATCTGTAGAACCCCGGGGTTGGGGAGTTTGTGTGGGGTCTGGGCAACTCCCCTTTTGAAAGGATGGTCCTCCCATTGAAGAACCAGAATCATCCCAATGAAGTTGAATCACCAGTCTGGCCAGGATAGCTGCAGCATCTGTGACATTCCTCTGGACGGAATCTTGGAATGGGAACCTGGAAAGTCTCCAGGACCCCGGGAGCCCTCAGTATCAGTGCTTATCCTGAGACTTCAGCCACCAGGGAGGGAAGCCAAGGAATTTCCAGTGCCTTCTAGCCTCTCTGGGTTCTTTGCTAATCCAGTAGGAGAACAGAATTTTAATGGGGGATGGGTGGTAAGTAAAACAGACCTACTTGCTGTCCCTGACGGGACAGGCTTTTTATAGCATTCCTGCATCCAGCAGGAGCCAAGAGCCAGTGGCTGAACCAGACAATGCCTCTCTCTGGTTATCAGACAGCAGTAGGTCAGGCAGATAGCACCTCCACTGGACAGACGCCCCGGAACCCTACTTCTCAGCCAAGCAGGCCGAGTTTCCACGTCCCAGCTCCAACTCACAGGCTCCTAACGCTTCCACTTAGCCTGGCACATGTGGGCGAGGCTGGAGAGTTTGTTTCTCTCCCCGTGTCTGGTCACAGGGAAGCGATGGCACCAGGCACTCAAAGGCTGTGCTTCCCTGCGTTCTTCACGGGCCCATAGATAGCTTTGCTCAGGCTCAGCCCTCAAACCCTGCCTGTGTGCAAGCCCAGCACATTCCCAGTCCAAGGCAGAGAACTTGGGAGAAGCCTGTGACTGTCACTTTGGGGGTCACCGCTGTGCTGTCTCTGGATTGAGCCAGGCGGCCAGTTGCGTGTGCTGGATTTTTGTTTTTTGTTTGTTTGTTTTTGTTGTCGTTGTTGTTGTTTTGTGGTGTTTATTTTGTTTTTTGGTCTATTGAGAGTGAGTTTTCTCTATGTAGCCCTGGCTGTGCTCGAACTAGCTATATAAACCAGGCTGGTCTCGAACTCAACAGAGCTCCACCTGCCTCTGCCTTCCAAGTGCTGGAATTAAAGGTGTACACACCACCGCCAAGCCTTCTACCTAGATCTTTACATACACGTGTGCTCTGTTCCCCTTTCTAGGAGGTGATAGGCTAGGAGAATGCAGGTCTGTTCTAGGTGAGCACAACCCCCCCCTCACTATATAAACAGACAAGCTCACAACCCCTCTGACATCACTGACTCCCTTGAAGTGAGGACAGCTGTTACAAGCTGTTAAAGCTTGGCTGACAGGGCTCCCCAGCCCATTCTGAACCCCAGAATTCAGATCTGAGGAGTCTTGAGAAATAAAGACATCACCCAGATATAAGGGACCACTTGGAGGAGAGGCCAGGTGTGTTTGCTAGAGGAAGGGATCCCCACTTCCAGAGGGGTGCATCTCCGTGAGGTCCCGTCTGTCTGCATTTCTGTGGCTTGTTCTAGGGCACCTCTGCTGTCCCATCCCCCACACAGCTCCTTCCTCTGAGGAGGGAGAAGCAGAGCAGGTATGACATTAATGTTCTGATTCCTGGAAGGATCAAAGCGAGCTTCTCCTCCCCTCCAGGCTTGTGAGCGAGCAGCTGACAGACACCTGCCACTTTGCTATGTCTGTCTACCTTGCTGTCCCCTTCCGTTAACAGTCTGTAAGAAACGCTAAAGTTAGAAACTTCCCCAAATCACCAATCTTCCTCCCTTCCTTCCAAGTGCCCCTGTGTGTGATAGTTATTCAGGCAATGAGTGTCCCTTACAGCTTTAGAACTGTGGGCTGATTGAGCAAGGTACAGCTGTGAGAACCATTCTTGCAGGGCACTGAGGCTGGAGCATGAGAGAAGACATTCGCGCATCGCTCTTCCCTTCCCCTACAGAGAAGGAGACCTCTTTACTCTGGGTCAGGTGGCTGCTCTCTGCCCCTGCACCTCATGCCCGGTGGTGCCACCATACCTCAGCCTCTAGCCATGCCTGGCATAGACAAGTAAATGCTGGTTGAGTGAATGGCTTCTGAGATGGGAGGAGAGATGTGCAGAGCAGTGGTGGTGGATGAGGATGGGATACAAGAGGAGAGAAAGAGGAGAGAAAGAGCCACATGAAGCTGACCCCTCCTGCATTTCTTCAGAGACCCTCTCCTGGGGTCTCAAAGAGGATGAGAATGGACGCTAAAGACCCATGCCTAGGGACTGGGGTTAAGAGCACTGAGTGCTCTTCCAGAGGACCCAGGTTCAATTCCCAGCACCCACATGGCAGCTCACAACTGTCTCTAACTCCAGTTCCAGGGGATCTGACTCCCTCACGCAGACAGGCAGGCTAAACGCCGTTGCACATGAAATAAAAAAGAAATAAATTATTTTTTAAAAGGAGACCCATGCCTGGCCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCGGCAACCGCATGGTGGCTCACAACCATCTGTAATGGGGTCCGATGCCCTCTTCTGGTGTGTCTGAAGACAGCGACAGTGTTCTCATATAATGCCCAATTCTTACTGAACATTAGCATAACCAAGTGTTCTTCTCCATAAAGTACCTAGTATTGTTGGCTGTCAGTTCCTACCAGGGTTCCACCTGTGTGCTGGACCAGATAGTATTTATACGGGGTATATTTAGCTGTGCCCTCTCCGCCCCCATGCGTGGGAACCATGGCTTGCTATGGCTATGACGTCTCTTCTCCTTCTACCCCCAG
Seq C2 exon
GCGTCCTTTGAAGTGTCTGTGGAGGCTCGGAGCTGCCCTGGCAGACATACAACACAGTCTTTTACCTTGAGGCCTGTGGGCTTCCGGGACAGTCTGCAGGTAGAAGTCGCCTACAACTGCACGTGCGGCTGTAGCGCCGGGCTGGAGCCCAACAGTGCCAGATGCAGTGGGAATGGAACATACGTCTGTGGGCTGTGCGAGTGTGACCCCAGTTACCTGGGCACTAGGTGCGAGTGCCAGGAGGGCGAGAACCAGAGCGGGTACCAGAACCTGTGCCGGGAGGCGGAAGGCAAACCCCTGTGCAGCGGACGTGGGGAATGCAGCTGCAACCAGTGCTCCTGCTTTGAGAGTGAGTTCGGGAGGATCTACGGGCCCTTCTGCGAGTGCGACAGCTTTTCCTGTGCCAGGAACAAGGGCGTCCTATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001795:ENSRNOT00000049974:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]