HsaINT0084362 @ hg19
Intron Retention
Gene
ENSG00000173826 | KCNH6
Description
potassium voltage-gated channel, subfamily H (eag-related), member 6 [Source:HGNC Symbol;Acc:18862]
Coordinates
chr17:61621373-61621772:+
Coord C1 exon
chr17:61621373-61621480
Coord A exon
chr17:61621481-61621609
Coord C2 exon
chr17:61621610-61621772
Length
129 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTTCCCTTTCCCTCCTGCAGATG
3' ss Score
14.01
Exon sequences
Seq C1 exon
GGTCTCCCCATGAGCTGGGGCCCCAGTTCCCCTCTAAGGGCTACAGCCTCCTGGGTCCTGGGAGCCAGAACTCCATGGGGGCAGGACCTTGTGCTCCAGGGCACCCAG
Seq A exon
GTAAGGAGAGCCACTCCTCACACCCTGTGTCCCCAGGGCAGGTAGGGGGTGGGGGACAGGCTCTATTGAGAAGGGTCAGGCCTGTGGAACCAGCTAGGCCCAGCTGAGACTTCCCTTTCCCTCCTGCAG
Seq C2 exon
ATGCAGCCCCTCCCCTGAGCATCTCAGATGCATCTGGCCTCTGGCCTGAGCTACTGCAGGAAATGCCCCCAAGGCACAGCCCCCAAAGCCCTCAGGAAGACCCAGATTGCTGGCCTCTGAAGCTGGGCTCCAGGCTAGAGCAGCTCCAGGCCCAGATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173826-KCNH6:NM_030779:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.809
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCAGTTCCCCTCTAAGG
R:
CTGTTCATCTGGGCCTGGAG
Band lengths:
252-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)