HsaINT0086127 @ hg19
Intron Retention
Gene
ENSG00000196422 | KIAA0649
Description
protein phosphatase 1, regulatory subunit 26 [Source:HGNC Symbol;Acc:29089]
Coordinates
chr9:138375796-138380739:+
Coord C1 exon
chr9:138375796-138375928
Coord A exon
chr9:138375929-138376294
Coord C2 exon
chr9:138376295-138380739
Length
366 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
TGTGCTTTCTTTCCGCCCAGGAT
3' ss Score
9.69
Exon sequences
Seq C1 exon
GAGCTTGTCGGTTGGGTCAAGAATGAACCTACGCATGACGGCGTGCTGATCCTGGGTTTCTAGTCATCCTTTTTAAGCTGCAAAGAAGCATTTGCAGACGTTGTCTCATGGGTACCGCTTGCCAACTTTGGAG
Seq A exon
GTAAATAAAACCTCTCCCCTCTTACAGAGAAGGTGGAAGCCCGGAGTGAGAAGGGAAGAGCGGGGAGGTGATGACCGTGCGTGCCCCGGGCGGCACCGTGGAGGGTGGTTGGAAACATTTTCTTACTGAATCTTCCCAGCAGCCCCGGGCTGGAGCAGGTAAATTGTTCCTTTCCCAGCTGAGGAATCCGAGGCCCCAGGAGCATGAGTAAGTCGTGCAAGGACACCCAGCTAGCTGGACGTTGGGCTCCACCCAACTCTCTCCACTCTGTGAGCCCGACATGCTGTTCCTCTGGGGCCTCGCTTGGTGTTGGCAGCTATCGCTGTTTGTAGCTGCATCATGCCCATGTGCTTTCTTTCCGCCCAG
Seq C2 exon
GATGTGAAGCCGGTAGAGAAATAAAGCATCGCCCCTCTGCGCGCCCCTCCCCGTCTGCTAGAATGTTTCTCATGAACGCTTCTCCAGTGGTTGCTCTCCAGTCCAAATGGGAGGCCTTTGGCCCGCCAGGGAGCTGTAGGTTCCCCAGGTGCTTCTCGGAGGCTGACGAGGGCGTGGAGAGCGCGTCGGTGAGCGCCCGGGTGCAGATGCTTATCAGCACTCTGCAGCGCGACGGGGCTGCTCGGGGCACCAGCGATGAGCGCGCCGCACAGAGGGGCCACAGGGCAGAGGGATGCCACGACGCCAGGCCGGCTGCCAAGCCCACCGTGCACAAGGAGCCACCCGCGTTGGCTGTCTGTGGTCTCGTTGCTGACTTTGACCCCATGGGGGAGGAGGAAACTACAGACTTTGGCCCGTTGGTGCTAGATTCAGACAGTGATGATTCCGTGGACAGGGACATTGAGGAGGCCATCCAGGAGTACCTGAAGGCAAAGAGTGGAGCCGCACAGCCCGGGGCCGGCGGGGCCCAGCCAGGTGCAGCCCAGCCTTCCAGGGCCGCAGGCGGAGGCAGTAGATGTAAGCCGGAACCGGCTCACGGCAGTGCCCCGACTGCCCTGTGTCCCCCAAAACTTGTACCTGGATCAGGTGGTGGCCCCGGCAGCCAGGTGGGATCCAGCAAGGACCAGGGCTCCGCCTCCCCGGTCAGTGTGAGCAGCGATGACTCCTTCGAGCAGAGCATCAGGGCGGAAATAGAACAGTTTCTGAATGAGAAGAGACAGCATGAGACCCAAAAATGTGATGGGTCAGTGGAGAAGAAACCAGACACAAATGAAAATTCCGCCAAGTCACTCTTGAAATCCCACCAAGAGCCGCCTACAAAGGTGGTGCATCGGCAGGGCCTGCTGGGCGTCCAGAAGGAGTTTGCCTTCCGCAAACCTCCCCGGTTAGCGAAGATGAACGTCCAGCCCAGAAGCCTCAGGTCCAAGGTCACAACCACGCAGGAGAACGAGGGCAGCACGAAGCCGGCAACCCCCTGCCGCCCTTCAGAAGCAGCACAGAATAAAGGTGGGATCAAAAGGAGCGCCAGCGCTGCAAGGAGGGGAAAGCGAGTCATGAGTGCGGCACAGGCGTCCGAGGCGTCCGACTCCAGCAGCGACGATGGCATTGAGGAGGCCATCCAGCTGTACCAGCTGCAGAAAACACGCAAGGAGGCCGACGGGGACCTGCCCCAGAGGGTCCAACTCCGAGAGGAGAGAGCGCCTGACCCTCCCGCACACAGCACAAGCAGTGCCACAAAAAGTGCCTTGCCCGAGACCCACAGGAAAACACCCAGCAAGAAGAAGCTAGTGGCCACCAAGACCATGGACCCTGGTCCAGGGGGCCTGGACACTGACCATGCCCCCAAGCTCCTGAAGGAAACCAAAGCTCCACCTCCAGCGAGCCCTGCTTCCAGGAGTGAGTTTGTGGAACGGTCCTCGTGCCGGGCGGACACATCTGCTGAGCTGATGTGTGCAGAAGCAATCCTGGACATCTCCAAGACGATCCTGCCGGCCCCTGTAGAGGGCAGTGACGGGTCCCTGTCCGCAAGCCCACTCTTCTACTCCCCGAACGTGCCTTCCCGCTCTGACGGCGACAGTAGCTCCGTGGACAGCGATGACAGCATCGAGCAGGAAATCCGGACATTTTTGGCCCTAAAGGCGCAGTCAGGGAGTTTGCTGGCCAGAGGTGAGAGCTGCCCGCAGGCTGCCCAGGGTCCACTTTTGCCGCCTGGCCTCAACAGCCAGACCGGCGGCCACAAGACCCCTCTCTCTAAAACACCAGACCCACTGCTGGGCTGCAAAAGGAAGCGTAGAGGTGGTGGCCATGTGAGGCCATCCACGCCCAAGAAAATGCAGGAGGTGGTGAAAGACGGTAGCCAGGATGCCGACCACAGCCAGGGGAGAGCTGAGCCCGGCCATGAGAGGCGAGACCTGCCCATCCAGGGCAAAGCCAGTGAGGCCCTGGGAGGGGAGGGCACCGCCAGGGGCCCTGGCGACACTCGCATGTCACAGGGCCAGGGTAAGACAGACGAGGCAAGGCGCCTAGACGAGAAAGAGAGCTCTGAAGACAAAAGCAGCTCCCTGGACAGTGACGAGGACCTGGACACAGCCATCAAGGACTTGTTAAGGTCCAAGCGAAAGCTCAAGAAGAGGTGCAGGGAGCCCAGGGCTGCGTGCAGGAAGAAGGTCAGGTTCAGCACAGCCCAGACGCACTTCTTGGAGCAGCTGGGCGGGCTCCGGAGAGACTGGAAAGACAGGGGCCCGCCAGTGCTGAAGAGCTGCCTCTCCAAGTCCAAGAGAGACAGTGGCGAGGGTCCTGGGAAGAAACCCCCCAGTGTCTTTGGCAGCACGGCAGAGAGGATGAGGCAGGAGGGTGCCGCGAGCCAGGACGCGGCCCTGGCCTTCCGGGTGAGGAGACCCGCCTCCGCCTCTGCCTCCGAAGGGAATCCATTCCCCAGGGAGTCCCAGGGCCCAGCTCCCAGCCCCGGCTCCCTGTCTGATGACAGCAGTTCAGTGGACAGCAACGACAGCATCGAACTGGAGATTAGGAAGTTTTTGGCGGAAAAGGCCAAGGAGTCAGTGAGCAGTTCAGAAGTTCAGGCAGAGGGCCCCACCGCTCTTGGGACAGGGGGCCCAGCCAGGCCAGAGGTGCTGTGCAGGAAGGAGCCTGCCCCACCGCCTGGCGTGTGCACACGCAGCCAGAGGGCCAGGGGGGTCCCACATCTGGCCGAAGGGCTTCGAGGCACAGAGAGCGCAGGAGCACAGGGCACAGCTGGTCTGTTCAGCCAGGGCGGGAAGGGGCTCCCTGCTGCTCCTGCCCGAGGGGATCCGGTGCCGCCCAGGAGCACCAGCGGCGGTGTCTCCGCCAAGGGGCTCTCAGTGAGCAGGAGAAATGTTTACGTTCACAAAGACCAGAGCCCACGAGGGGCTGAGCCTGCTGCCAAAAGTGCTTTTGGTCAGCTGCCCAGCTGTGCCACAGCGGGCACCGAGGCAGGAGGCGCCAGAGGAACCTTTCACATGGGCTGCGGGAGCCCGAGCTTCCTGACCCCCAGCCCGGGAGCGGAGAGGGACGCTGGAGCCCAGGCCGACCGCACACCGCCCTGGAGCGACTTCGCCCACCAGAGTCGGCTGCCCAGCCCGTGGGTGCTGCGCTCCGAAGGCAGAGATGCAGTGTGGAGGGGGGGCGTCGGGAGCGAGAGAGACAAGGGGTCCGAGGGCCCCGCCCGGGGCCTGCCCAGCCTGCCCCTTGCGGGCTTCTCGCCGCTGCTGTCCACCCAGCTCTTCCACTTTGGAAAGGGTGTCTCCTGGGGGGGCAGGCAGGCTGGCCTCTTCAGCCCCCACCTGGGGCTGCCTCTGCAGGGCCCCTCCTTCTCGGCCTTCAGGGAGGCCCAGGCCGGACCCAGCCCTGTCTTTGGAAGCCCACACTTGCTGGCAAAGAAGGACGGCGGCCCCTGGCCAACCAGGAAGGCACAGGCAGGGCTGAGTTTGCATGACAGGAGGAGCTCGGGCTCGGAGGAAAGCATTTTAGACCTGAGGTATCGACGAAGGGTCAACAGGGATGACCAGGAGCAGGACGCCTTGGGCAGTGACGCCAGTGACTTCAGCGACACCTCCACGGAGGACAGTGGCGGCAGCTCAGTAGTGAAGGTCTAAGCCCTCGAGCTGTGGGTTCGCGTCCTGGGTTGCGTGCATTCGTGGAAAGCGGCGTAGCCGTGCGTGTGTGTGATGGTTCCGTGGCTGCAAGGAAGGGAAACAGTCTATTATACATAGCCCTGTATATATGTACACCAACATGAAACTTTTATTTAACAGACGTGTCCTGGTAAATATGATTTTTGTAGCTTTTTGTAAATTATTTAAAGTGATGTAAAAGATATTTTTGGAAAATACTGTTGTTCAATTTTGTAGGGTGTTCCTAACTGCAGTTTTCTGTGTTCTGCATACAAGTCTTAGCTTAGGAAACATTTGGTTCTTACCATCACAGCCAGGTTCACAGAGGCTCTGATGCTTTTTGGTTGATTGCTGGTGAGAATGGCCGGCGGTGGCTGCAGTGGTAGCCTGAGGAAGGCCAAGCTGCCCTCCCTGGGAATCACTCAGATGCCCCAAGATGTCCGTTGGGAAGCTCCCAGGACAGCACTTTTTATACAGAGGACACCGCCTCGGCCCCACGTCCTTAGAGGCCAGAGCACATCTGAAAACTGCAATCACAGCCGTCCGCTGGAAAAACGTTTCGAAGCACAGTGGCCAGCGAGCGAGCACGTGGCTACTCCCTGTTGCATGTCAAATCCACACAGATGTCAGCGGCAGCTGCTCGGCAGCCCAGCCCTGGGCCTGGGTGGGTTCATGTCCAATCTTGTTCGATCACTAGATGATTCTAACATCGAAATAAACCTCTTTTTATATGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196422-KIAA0649:NM_014811:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTCGGTTGGGTCAAGAA
R:
CTGATAAGCATCTGCACCCGG
Band lengths:
348-714
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)