MmuINT0070553 @ mm9
Intron Retention
Gene
ENSMUSG00000035829 | Gm347
Description
protein phosphatase 1, regulatory subunit 26 [Source:MGI Symbol;Acc:MGI:2685193]
Coordinates
chr2:28304212-28311028:+
Coord C1 exon
chr2:28304212-28304428
Coord A exon
chr2:28304429-28305821
Coord C2 exon
chr2:28305822-28311028
Length
1393 bp
Sequences
Splice sites
5' ss Seq
CAAGTAATT
5' ss Score
3.86
3' ss Seq
TATGCTCTCTCTGTTCCCAGGAT
3' ss Score
11.86
Exon sequences
Seq C1 exon
ACAGTTTGGTCTCACTAGAGACCCCTGGCTAAGCCAGGAACTCACTATGCATAGACCAGGCTATCCTGGTGCTTGGACTAAAAGTGTACACCACCATGTCCAGCCCTCACACGGCCGACTTTAAAAGCTGGTAGAAGATGCTTTGAAGTGCAAGCCGAGCAGTGAAGACCTCACCTGGAAGCCTTGCAGAGCATCAGCCTACACCTGAGACTTACAA
Seq A exon
GTAATTACAATAGATTTTTTTTTATACTAGTTTAACTCTTTTTTTTTTTTTAAGATTTATTTATTTATTATATGTAAGTTCACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCACTAGTTTAACTCTTAAAGCACACATTGGTAATCACCATGAGTTGCCGCTGCATCTTCAGTGACCTCTCCATTTGTTGCCTGTCGCTCTGAGCAGATTTTGGTCTAGATGCCCAGCCCCACCTCTTAGGGAAGGGATTTCAGTATGTCTACAGCACATCCCAGCCTGTCAGAAAGGCAGGTCCTGATTAAGTACATAGAAGTAAAGCAAACCGAAGGTCAGGCTCTGCTCTATGGCCTTGGGTTAGAGGTGGAACAGCCTTCCATGCCTTCCCTTGGAGGAACTCAGGTCTCTGTCCTTCAGCCTTGCAGGTGCTCCTCAATCTCTGGGAGGCAGAAGGGCATCAGAGAAGCCTGGAGGAATTGAGAGCTGTACAGAGCAGCTGGCATTTTTCCGTGTGACCCAGTGCCTCTTAGATTAGGCTCCTCTTAGGATGACTCTGTGAACTTTCTTAGTGTTCCTGACACCAGCCTAGCTGATATGTAGAGACCTGGCTCTAACCACATAGGCACGTGACACTTCACAGTGTCCTCGGCCTCCAAGCTGGCAAGCCCATGATCTGTCTACACACCACACAGTCCTTTCTCCAGGCCTACCCACATGATAGGACCACCAAAATTTTCATGCTAATTGGGCAAAATTGGTGTCAGCCTTTGAGTAGCAGCTGTCAAATACACATTTGACATTTTTCACATGAAACAGCATAAGGAAGGCAATTCTGAAAAAAAGGCTCGAGGAAGTGTGTTCTGAGTCTGTCATATGGTGCAGCTTTGATCATATTTATTGGTCATTTCCAGAGAGGATCCACCCATAAAGTCCTACTTACCTGTGTGTTGTCATTCTTCTTAAAGCACAGACAAGCATTTCTAGACTGCTGTGGCTTCTGATAACACTGGGAGGTAAATGACGTCTCCTTTGTCCTCCTCTTACGGAAAAGTGCGAACCCAGAAGGGAAAGGAAAGAGCTGCTGGAGTTTGCACTTTGTTTTTTTAACTGAGTCTTCCACCTACAGGGCGGAAGTGACTCCTAGAACTGCTCACAAAACTGACACCTAAGAGGCTGGCATAAGCCACTCCAGTCAACGAGACATTAGGTTGTAGTGGCGTGATTATTTGCTGATGTCACTGCTCAGCTCTACCCTTCCTTATGCTCTCTCTGTTCCCAG
Seq C2 exon
GATGTGAAACAGGCTGACCCATAAGCCCTGCCTCTCAGCACCCAGCCTGCCTGCTAGGATGTTCCTCATGAACGCCCCTCCAGTGGTGGCGCTCCAGTCCAGATGGGAGGCCTTTGGGCAGCCCAGGAGCTTCTGCCTCCCAGACTGCTTCTCTGAGGCTAAAGAGGACGGCTCCAGGGCTTCCGTGAGCGCCAGGGTCCAGATGCTCATCAGCACGCTTCAGAGGGACGAGGCTGCCCTGGGCATGGGCCATGAGCGTCTCACCCAAAGAGGCCAACGTGCAGAGAGGTCCCGGGACACGAGGCTGGCCCCCAAGCCTGCTGTATGCAAAGAGCAGCCAGAGTTCCCTGCCCGTGGTCTCGTGGCAAACTGCAGCGCCCTGGAGAAAGATGAAGCTGGGAGACGCAGTCCCTTGGAGCTGGATTCTGACAGTGATGACTCCGTGGACCGAGACATTGAGGAAGCTATCCAAGAGTACCTGAAGGCAAGGGGTGGGGCTTCTGAACCTATGTCCCAAGGGGCCCCCTCTATCCCCGAGCCTGCCCACAGCAGCACCTTGCCCATCCCGTGTCCCTCACAGCTCACTCCCGGCTCAGGTAGTGTTCCTGTGGGAGCCAGTGAAGATCAGGGCTCCACCTCCCCAGCGAGCATGAGCAGCGAGGACTCCTTTGAACAGAGCATCCGAGCTGAAATAGAACAGTTTCTTAATGAGAAAAGACAGCATGAAAACCCGAAGTGTGATGGGTTTGTGGATAAAAAATCCGACCCAAACAACAGCCCTGCCAGACTTAGAGGGAACCGAGAAACCTCAGCCAGGGCAGCTCTGATGGGAACGTGTAAGGAGTTCATCTTCCGAAAACCTCCCAGGTTAACAAAGATGAGCACACAGCAGAGAAACTTCCAGCCTAAGCCCACCACAGAGCCTGAGACCCCAGTGAGCACGAAGCTGACCGCCCACAGACCGGAGGCTGCACAGAGCAGGGGTGGGGTGAGGAGGAGCATGCCTGCCAGGCGCAGCAAGCGCATCAGGAGCTCGGCCCCAGTGCACCAGGCATCAGACTCCAGCAGTGACGACGGCATTGAGGAGGCCATCCAGCTATACCAGCTAGAGAAAACCAGGAAGGAGGCCAGTGGGGACCCACCTCTGAGAGGCCAGCTGAAAGAGGAAAGCCCTGGTAGTGCCCAGCCAAACGCCTTGCCTGAAGCCCACAGGAGACCCCCTAGCAAGAAAAAGCTGGCTGTTCCCAAGGTTATAGACACCACCCAGGGGGTCCTCCACCCTGATCCCCTCTCCAGGCTCCTGACGGATTCGAGAGCCTCTTTACCTCCAGGACACGCAGCTGCCAAGAGTGAAGCTGTGTGCCAGGCCTCACGCCTAGCAGACACATCTACCGAACTGATGTGTGCAGAAGCGATCCTGGACATCTCCAAGACCATTCTGCCAGCCCCCATGGAAGGCAGCGACAGGCCTCCATCCAGGAACCCACTCTTCTGTCCCCAACCCATGCCTCCCCGTTCTGAAGGTGACAGCAGCAACATTGACAGTGATGATAGCATCGAGCAAGAGATCCGAACGTTTTTGGCTCTCAAGGCACAAGTAGGGAGTCCTCAGCCTGCCCAGGGTCCACTGTCTTCGCCTGGCCCCAGTGGCCAGCCTGGCATCCCCAAGGTCCCTTTTGCTAAAACACTAGATCTCCCTCTGGTCTGCAAACGGAAACGGAGAGGTGGAGGAGGCAGCACTACAATGCCCAAGAAAATAAGGGAGGGTAGAGAAAGTACCCAGGACGCTGACCACATCCAGGGGAAAGCTCAGCCTGGCCATGACGGGTGGGACCCTCTCGGGCACAACAAAATCACAGAGACCCCAGGAGGAGAGGCTGAAGCCAAGGAACAGCCTGTCATTTCCAGGACAGTTGGGCTCAGTGATACACACCTACCACAAGGGGCCCTCGGGAAGGCCACTGAGAAGGAAAGCTCTGAGGATAAGAGCAGTTCTCTGGACAGTGACGAGGACCTGGACATGGCCATCAAGGACTTGCTAAGATCCAAGCGCAAGTTTAAGAAGAGGTGCCGAGACCCACGGGCTTCCTGTAAGAAGGTCAGATTTGGCAGCACAGAGACTCGGTGTGGGGAGAAGCCGAGCAACCTTCCAGGGGACTGGAAAGACCACAGACAGCAGGCACTACGGAGCTGTCTGCCCAAGTGCAGAGGGGACAATAAAGATGGCCCAGGACGAAGCCCAGGAAGCAGTGTGGCAGAGAAGGCAAAGATGGGTGGCACAGGGGGCGAGGACGCAACCCCTGCCTTTCTCCTCAGGAGGAAAAGTCCAGAAGGGGCTCTTCCCTCTACAGACACAGGAGCCAGTGGCCACCCTCCTTCAGCCTCCAGCCCCACATCTGAGGACAGTGCAGTGGACAGTGATGACAGCATCGAGCTGGAGATCAGGAGGTTTTTGGCAGAGAAGGCCAAGGAGTCTATACGCAACACAGAACCTCAAGGGGGACCTGCCAAGCCAGAGATGCCCTGTAGGAAAGACCCAACCCTGGGGTTGCAGCCTGGAGTGTGCACACGGAGCCAAAAAGCCAGGGGAACCCCTCAGCTGGCCGAAGGAAGGAGAGGCCCAGAGAGAGCTCGGACACAGGCAACCGGCCTCTTGAGCCAGTCTGGGAAGGGCACCCTCCGTGCTGAGCAGACCGCCCGCCTCACCACTGCCCTGGGCCGAAGTGAGCCAGCACTACCCAAGAACACCTGCAGGAACAGCTCTGCCAAAGCATCTCCGCCAAGCAGGAAAAGTGCTCACGTTCACAAAGACCATAGCCCACAGGGAAGCCAGACTGCAACGGCAGAAAGTGTGTTCGGTCAGCTGCCCAGTTGTGCCAAAGTGGGTGCCGAGGCTGGAAGCGCCGGGGGTACCTTTCACCTGAACTATGGCAGTCAGAACTTGCTAACCCCCAACCCTGGGTCCCAGGCTGACCTCGTCCTTCCTTGGAGTGACTTTGCACACCAGAGCAGGCTATCCAGCCCATGGGTGCTGAACTCGGGTCAAGGCACAGTGTGGACAGGGGTCTTTAGGGGTGAGAAGGAAAAAGGGGCTACATCACAGGCTGGGGCCCCACCCAGCCTCTCCTCAGGCCCCAGGAAGGGCCTGCCTTTCCTCTCCACCCAGCTCTTCCACTTTGGGAAGAATGTTTCTTGGGGGGGCAAGCAGACCAGCCTCTTCAGCCCCAATCTAGGCTTACCTCTGCAGGCTCCCGCATTCTCAGCCTTCAGGGAGACCCAGCCTGGCCACAACCCTGTATTTGGAAGCCCACACTTGCTAATGAAAGACAGTGGGAACTGGCCAAGCCGGAAGGCTCAGGGGACCCTGAGACAACAGGACAGGAGGAATTCTGCCTCTGAGGACAAAGTTCTAGACCTGAGATATCGGCACAGGGTTGACAGGGAACCGCAGGACCAGGAGACCTTGGGCAGTGATGCCAGCGAATTCAGTGACACTTCCATGGAGGATGGGGGCAGTGCCACAGTGAGCAGTAAAGGCCTCAAGTTGTGACAGGCATGCCATGCCATGGCTGTGGGAAGCAGTGTCCGTGTCTTGCCTGATGTGTGTGCATGCATGCCTGTCTGTATGTGTGTGACTTTGTGTTTATGTGCGTGCGTGAGCCTCTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGCCTGTGTGTTAGGCAGCATAGGGTGGAAGTAGGGGATCATGACAGATAAAGAGCAAAAATTGGGTCCCTTCCATGCAGCTCCCATCCACCCCTAATATAAATATAAATATGTACACTAACTTCAAATGACATTTTTATTTAATGAATGTGTCCTGGTACATAATGGGTTTTGTAGGTTTTTTGTAAATTATTTTAAAAGTGCTGTAAAAAATACTTTTTGAAAATGTTCAGTCTTGCAGGGCGTTCCTAGCTGCAGTTCTGGGTCTCAGTGCATGTGTGGTAGGTGAGTAGACCCTTGGTTCTGCCTGTCCCTGTGAGGGTCAGAGACAGAGGCTGGAACCGCTTTGCTTGTGAAGATATTCAGGCCTGGAGATCGCAGCAACCATTTACCTTGGAAGTGCTAATGTGGTTGAGGTATGTCAGGATACCACTGGGGCAAGGGTGTCCCTGGATTCTGTAGTCATGACCTGTAATTAGAAAACATTTCAAAGCACAACAGCTAGCAAATAGCTAACCATCCATCCCATCTAGTGTGGGAATCACTACTGGCTCTGTAGCTCAGCTGACCCCAGATCATCCAGTATCCAGTAGCTGGGGGATTCTAACATCCTTATAAATCCCTTCATATAAGGGCTACAGATTTGCTTTTAATCATGGCTCTAAAAGGTGATCCCACATATCCGTTTTGACTGTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCCATGAGATGGCTTGGTCTCCAAACACCTTAGCCACCTGTGATGGTGAGCCCCAGCCCTGGAAGCAGTGAGGGCAAACCCTCCCACAGCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATGCTGCCTCTACCCAGGAGAAAGAAGGCTCTGGCCAGTGCTGAGGCCAGACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGAGGTGCCTGTGGCAACTGGGAACTGAAGATGTGCTGGAGCCCAGATGTGAAGATTACATCTGTGTTGTGATTCCACCTGTCTTCCCTGAGTTCTGCAGCTCAGTATTCTGGATTGCTGTGTGGCTACTTTGTGGCTGAATTCTATTGGTATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCCTCCCCATCTGCCACGTTGGAACTTTGATGTGGTGGCAGGCTCTGTGGTCCCGTTGTGGTCCTAAATGATCTGGTTCTATGTATAGTAAATTCATCGTGATATTTGTTCGTGTGTTTCTAGGAGAAACAGCTTTGTGTCGTCATCCATGTTCCCACTTTAAATTTTCTGAGTGCTTTTAGCCCCTGAAAACAAAGAGCATCTTGTTTTGTATATAAGACCCATCCAGTTTGGGTTTTTGTTTTTCTAATGAATAAACCAAGTACTATCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035829-Gm347:NM_001005420:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTTTGAAGTGCAAGCCG
R:
CTTTGGGTGAGACGCTCATGG
Band lengths:
351-1744
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: