HsaINT0086127 @ hg38
Intron Retention
Gene
ENSG00000196422 | PPP1R26
Description
protein phosphatase 1 regulatory subunit 26 [Source:HGNC Symbol;Acc:HGNC:29089]
Coordinates
chr9:135483950-135488893:+
Coord C1 exon
chr9:135483950-135484082
Coord A exon
chr9:135484083-135484448
Coord C2 exon
chr9:135484449-135488893
Length
366 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
TGTGCTTTCTTTCCGCCCAGGAT
3' ss Score
9.69
Exon sequences
Seq C1 exon
GAGCTTGTCGGTTGGGTCAAGAATGAACCTACGCATGACGGCGTGCTGATCCTGGGTTTCTAGTCATCCTTTTTAAGCTGCAAAGAAGCATTTGCAGACGTTGTCTCATGGGTACCGCTTGCCAACTTTGGAG
Seq A exon
GTAAATAAAACCTCTCCCCTCTTACAGAGAAGGTGGAAGCCCGGAGTGAGAAGGGAAGAGCGGGGAGGTGATGACCGTGCGTGCCCCGGGCGGCACCGTGGAGGGTGGTTGGAAACATTTTCTTACTGAATCTTCCCAGCAGCCCCGGGCTGGAGCAGGTAAATTGTTCCTTTCCCAGCTGAGGAATCCGAGGCCCCAGGAGCATGAGTAAGTCGTGCAAGGACACCCAGCTAGCTGGACGTTGGGCTCCACCCAACTCTCTCCACTCTGTGAGCCCGACATGCTGTTCCTCTGGGGCCTCGCTTGGTGTTGGCAGCTATCGCTGTTTGTAGCTGCATCATGCCCATGTGCTTTCTTTCCGCCCAG
Seq C2 exon
GATGTGAAGCCGGTAGAGAAATAAAGCATCGCCCCTCTGCGCGCCCCTCCCCGTCTGCTAGAATGTTTCTCATGAACGCTTCTCCAGTGGTTGCTCTCCAGTCCAAATGGGAGGCCTTTGGCCCGCCAGGGAGCTGTAGGTTCCCCAGGTGCTTCTCGGAGGCTGACGAGGGCGTGGAGAGCGCGTCGGTGAGCGCCCGGGTGCAGATGCTTATCAGCACTCTGCAGCGCGACGGGGCTGCTCGGGGCACCAGCGATGAGCGCGCCGCACAGAGGGGCCACAGGGCAGAGGGATGCCACGACGCCAGGCCGGCTGCCAAGCCCACCGTGCACAAGGAGCCACCCGCGTTGGCTGTCTGTGGTCTCGTTGCTGACTTTGACCCCATGGGGGAGGAGGAAACTACAGACTTTGGCCCGTTGGTGCTAGATTCAGACAGTGATGATTCCGTGGACAGGGACATTGAGGAGGCCATCCAGGAGTACCTGAAGGCAAAGAGTGGAGCCGCACAGCCCGGGGCCGGCGGGGCCCAGCCAGGTGCAGCCCAGCCTTCCAGGGCCGCAGGCGGAGGCAGTAGATGTAAGCCGGAACCGGCTCACGGCAGTGCCCCGACTGCCCTGTGTCCCCCAAAACTTGTACCTGGATCAGGTGGTGGCCCCGGCAGCCAGGTGGGATCCAGCAAGGACCAGGGCTCCGCCTCCCCGGTCAGTGTGAGCAGCGATGACTCCTTCGAGCAGAGCATCAGGGCGGAAATAGAACAGTTTCTGAATGAGAAGAGACAGCATGAGACCCAAAAATGTGATGGGTCAGTGGAGAAGAAACCAGACACAAATGAAAATTCCGCCAAGTCACTCTTGAAATCCCACCAAGAGCCGCCTACAAAGGTGGTGCATCGGCAGGGCCTGCTGGGCGTCCAGAAGGAGTTTGCCTTCCGCAAACCTCCCCGGTTAGCGAAGATGAACGTCCAGCCCAGAAGCCTCAGGTCCAAGGTCACAACCACGCAGGAGAACGAGGGCAGCACGAAGCCGGCAACCCCCTGCCGCCCTTCAGAAGCAGCACAGAATAAAGGTGGGATCAAAAGGAGCGCCAGCGCTGCAAGGAGGGGAAAGCGAGTCATGAGTGCGGCACAGGCGTCCGAGGCGTCCGACTCCAGCAGCGACGATGGCATTGAGGAGGCCATCCAGCTGTACCAGCTGCAGAAAACACGCAAGGAGGCCGACGGGGACCTGCCCCAGAGGGTCCAACTCCGAGAGGAGAGAGCGCCTGACCCTCCCGCACACAGCACAAGCAGTGCCACAAAAAGTGCCTTGCCCGAGACCCACAGGAAAACACCCAGCAAGAAGAAGCTAGTGGCCACCAAGACCATGGACCCTGGTCCAGGGGGCCTGGACACTGACCATGCCCCCAAGCTCCTGAAGGAAACCAAAGCTCCACCTCCAGCGAGCCCTGCTTCCAGGAGTGAGTTTGTGGAACGGTCCTCGTGCCGGGCGGACACATCTGCTGAGCTGATGTGTGCAGAAGCAATCCTGGACATCTCCAAGACGATCCTGCCGGCCCCTGTAGAGGGCAGTGACGGGTCCCTGTCCGCAAGCCCACTCTTCTACTCCCCGAACGTGCCTTCCCGCTCTGACGGCGACAGTAGCTCCGTGGACAGCGATGACAGCATCGAGCAGGAAATCCGGACATTTTTGGCCCTAAAGGCGCAGTCAGGGAGTTTGCTGGCCAGAGGTGAGAGCTGCCCGCAGGCTGCCCAGGGTCCACTTTTGCCGCCTGGCCTCAACAGCCAGACCGGCGGCCACAAGACCCCTCTCTCTAAAACACCAGACCCACTGCTGGGCTGCAAAAGGAAGCGTAGAGGTGGTGGCCATGTGAGGCCATCCACGCCCAAGAAAATGCAGGAGGTGGTGAAAGACGGTAGCCAGGATGCCGACCACAGCCAGGGGAGAGCTGAGCCCGGCCATGAGAGGCGAGACCTGCCCATCCAGGGCAAAGCCAGTGAGGCCCTGGGAGGGGAGGGCACCGCCAGGGGCCCTGGCGACACTCGCATGTCACAGGGCCAGGGTAAGACAGACGAGGCAAGGCGCCTAGACGAGAAAGAGAGCTCTGAAGACAAAAGCAGCTCCCTGGACAGTGACGAGGACCTGGACACAGCCATCAAGGACTTGTTAAGGTCCAAGCGAAAGCTCAAGAAGAGGTGCAGGGAGCCCAGGGCTGCGTGCAGGAAGAAGGTCAGGTTCAGCACAGCCCAGACGCACTTCTTGGAGCAGCTGGGCGGGCTCCGGAGAGACTGGAAAGACAGGGGCCCGCCAGTGCTGAAGAGCTGCCTCTCCAAGTCCAAGAGAGACAGTGGCGAGGGTCCTGGGAAGAAACCCCCCAGTGTCTTTGGCAGCACGGCAGAGAGGATGAGGCAGGAGGGTGCCGCGAGCCAGGACGCGGCCCTGGCCTTCCGGGTGAGGAGACCCGCCTCCGCCTCTGCCTCCGAAGGGAATCCATTCCCCAGGGAGTCCCAGGGCCCAGCTCCCAGCCCCGGCTCCCTGTCTGATGACAGCAGTTCAGTGGACAGCAACGACAGCATCGAACTGGAGATTAGGAAGTTTTTGGCGGAAAAGGCCAAGGAGTCAGTGAGCAGTTCAGAAGTTCAGGCAGAGGGCCCCACCGCTCTTGGGACAGGGGGCCCAGCCAGGCCAGAGGTGCTGTGCAGGAAGGAGCCTGCCCCACCGCCTGGCGTGTGCACACGCAGCCAGAGGGCCAGGGGGGTCCCACATCTGGCCGAAGGGCTTCGAGGCACAGAGAGCGCAGGAGCACAGGGCACAGCTGGTCTGTTCAGCCAGGGCGGGAAGGGGCTCCCTGCTGCTCCTGCCCGAGGGGATCCGGTGCCGCCCAGGAGCACCAGCGGCGGTGTCTCCGCCAAGGGGCTCTCAGTGAGCAGGAGAAATGTTTACGTTCACAAAGACCAGAGCCCACGAGGGGCTGAGCCTGCTGCCAAAAGTGCTTTTGGTCAGCTGCCCAGCTGTGCCACAGCGGGCACCGAGGCAGGAGGCGCCAGAGGAACCTTTCACATGGGCTGCGGGAGCCCGAGCTTCCTGACCCCCAGCCCGGGAGCGGAGAGGGACGCTGGAGCCCAGGCCGACCGCACACCGCCCTGGAGCGACTTCGCCCACCAGAGTCGGCTGCCCAGCCCGTGGGTGCTGCGCTCCGAAGGCAGAGATGCAGTGTGGAGGGGGGGCGTCGGGAGCGAGAGAGACAAGGGGTCCGAGGGCCCCGCCCGGGGCCTGCCCAGCCTGCCCCTTGCGGGCTTCTCGCCGCTGCTGTCCACCCAGCTCTTCCACTTTGGAAAGGGTGTCTCCTGGGGGGGCAGGCAGGCTGGCCTCTTCAGCCCCCACCTGGGGCTGCCTCTGCAGGGCCCCTCCTTCTCGGCCTTCAGGGAGGCCCAGGCCGGACCCAGCCCTGTCTTTGGAAGCCCACACTTGCTGGCAAAGAAGGACGGCGGCCCCTGGCCAACCAGGAAGGCACAGGCAGGGCTGAGTTTGCATGACAGGAGGAGCTCGGGCTCGGAGGAAAGCATTTTAGACCTGAGGTATCGACGAAGGGTCAACAGGGATGACCAGGAGCAGGACGCCTTGGGCAGTGACGCCAGTGACTTCAGCGACACCTCCACGGAGGACAGTGGCGGCAGCTCAGTAGTGAAGGTCTAAGCCCTCGAGCTGTGGGTTCGCGTCCTGGGTTGCGTGCATTCGTGGAAAGCGGCGTAGCCGTGCGTGTGTGTGATGGTTCCGTGGCTGCAAGGAAGGGAAACAGTCTATTATACATAGCCCTGTATATATGTACACCAACATGAAACTTTTATTTAACAGACGTGTCCTGGTAAATATGATTTTTGTAGCTTTTTGTAAATTATTTAAAGTGATGTAAAAGATATTTTTGGAAAATACTGTTGTTCAATTTTGTAGGGTGTTCCTAACTGCAGTTTTCTGTGTTCTGCATACAAGTCTTAGCTTAGGAAACATTTGGTTCTTACCATCACAGCCAGGTTCACAGAGGCTCTGATGCTTTTTGGTTGATTGCTGGTGAGAATGGCCGGCGGTGGCTGCAGTGGTAGCCTGAGGAAGGCCAAGCTGCCCTCCCTGGGAATCACTCAGATGCCCCAAGATGTCCGTTGGGAAGCTCCCAGGACAGCACTTTTTATACAGAGGACACCGCCTCGGCCCCACGTCCTTAGAGGCCAGAGCACATCTGAAAACTGCAATCACAGCCGTCCGCTGGAAAAACGTTTCGAAGCACAGTGGCCAGCGAGCGAGCACGTGGCTACTCCCTGTTGCATGTCAAATCCACACAGATGTCAGCGGCAGCTGCTCGGCAGCCCAGCCCTGGGCCTGGGTGGGTTCATGTCCAATCTTGTTCGATCACTAGATGATTCTAACATCGAAATAAACCTCTTTTTATATGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196422:ENST00000356818:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTCGGTTGGGTCAAGAA
R:
CTGATAAGCATCTGCACCCGG
Band lengths:
348-714
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development