HsaINT0088993 @ hg19
Intron Retention
Gene
ENSG00000188883 | KLRG2
Description
killer cell lectin-like receptor subfamily G, member 2 [Source:HGNC Symbol;Acc:24778]
Coordinates
chr7:139138088-139138960:-
Coord C1 exon
chr7:139138857-139138960
Coord A exon
chr7:139138454-139138856
Coord C2 exon
chr7:139138088-139138453
Length
403 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
CCCCTCCCATCCTTTCCCAGACT
3' ss Score
10.37
Exon sequences
Seq C1 exon
GACTTCCTGGGCAGATACCCAGTCTCCAGGCACTCCTGGGTGGGGGCCTGGCGAGGCCCCCAGGGCTGGCACTGGATCGACGAGGCCCCACTCCCGCCCCAGCT
Seq A exon
GTGAGTGACCACGGGCTTTTCTCCCTCCTCTGCTGTTCTGGATCCTCCATTTCTCCCCAGACTCCACCTCCTTGCTGCTCCCCTAGCCTGGAATGCCACTTGGAAAGCAGCCCACGCCCATGCTCGCGGCCTGGTGCCTGATTAGACCCTGTCGCTTCACTCTTTATTTGGGTTCCCAGCACGTTCACCCAAGCAGGGTTGTCACCCCCATTTTACAGATGCGGGGTCAGCTGCCCAGGGAGGTTTGGGGATTCATCCAGTGCCACGTGGCTGACCAGTGCAGTGACTCACTCAGTGCCCAGGCCGGTAGAGGTGACAGGCACACACGCTGGAGGGTCTGGCTGGGAAGCAAGGCCCCGGCACCCTAAACACCTCTCCTCTTTCCCCTCCCATCCTTTCCCAG
Seq C2 exon
ACTCCCTGAGGACGGCGAGGACAATCTGGATATCAACTGTGGGGCCCTGGAGGAAGGCACGCTGGTGGCTGCAAACTGCAGCACTCCAAGACCCTGGGTCTGTGCCAAGGGGACCCAGTGATCTGGGCTCTGCCTGGTCCTCAGCCTGCCAGGCAGATGCAGCACCCCCTACAGGGGAGGCCAGTTGAGAGCTTGGGCAGCCTCTTCCTGGACCCAGTTATCCAGGTCTTCATGCTCTGCTCAAGGGGGCCACATGAGCGAGCCTAGGAGCTGGACTTCAACCCAGGAAGATGCATCCGAGGGAAAGGAGATTTTCTATGGCCTCAGGCCTGAGTGCCAATATTAGTCTCCAGCTTCTGTGGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188883-KLRG2:NM_198508:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.363
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(35.1=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(37.1=87.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGATACCCAGTCTCCAGG
R:
CCCCTTGAGCAGAGCATGAAG
Band lengths:
343-746
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)