HsaINT0088993 @ hg38
Intron Retention
Gene
ENSG00000188883 | KLRG2
Description
killer cell lectin like receptor G2 [Source:HGNC Symbol;Acc:HGNC:24778]
Coordinates
chr7:139452690-139454214:-
Coord C1 exon
chr7:139454111-139454214
Coord A exon
chr7:139453708-139454110
Coord C2 exon
chr7:139452690-139453707
Length
403 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
CCCCTCCCATCCTTTCCCAGACT
3' ss Score
10.37
Exon sequences
Seq C1 exon
GACTTCCTGGGCAGATACCCAGTCTCCAGGCACTCCTGGGTGGGGGCCTGGCGAGGCCCCCAGGGCTGGCACTGGATCGACGAGGCCCCACTCCCGCCCCAGCT
Seq A exon
GTGAGTGACCACGGGCTTTTCTCCCTCCTCTGCTGTTCTGGATCCTCCATTTCTCCCCAGACTCCACCTCCTTGCTGCTCCCCTAGCCTGGAATGCCACTTGGAAAGCAGCCCACGCCCATGCTCGCGGCCTGGTGCCTGATTAGACCCTGTCGCTTCACTCTTTATTTGGGTTCCCAGCACGTTCACCCAAGCAGGGTTGTCACCCCCATTTTACAGATGCGGGGTCAGCTGCCCAGGGAGGTTTGGGGATTCATCCAGTGCCACGTGGCTGACCAGTGCAGTGACTCACTCAGTGCCCAGGCCGGTAGAGGTGACAGGCACACACGCTGGAGGGTCTGGCTGGGAAGCAAGGCCCCGGCACCCTAAACACCTCTCCTCTTTCCCCTCCCATCCTTTCCCAG
Seq C2 exon
ACTCCCTGAGGACGGCGAGGACAATCTGGATATCAACTGTGGGGCCCTGGAGGAAGGCACGCTGGTGGCTGCAAACTGCAGCACTCCAAGACCCTGGGTCTGTGCCAAGGGGACCCAGTGATCTGGGCTCTGCCTGGTCCTCAGCCTGCCAGGCAGATGCAGCACCCCCTACAGGGGAGGCCAGTTGAGAGCTTGGGCAGCCTCTTCCTGGACCCAGTTATCCAGGTCTTCATGCTCTGCTCAAGGGGGCCACATGAGCGAGCCTAGGAGCTGGACTTCAACCCAGGAAGATGCATCCGAGGGAAAGGAGATTTTCTATGGCCTCAGGCCTGAGTGCCAATATTAGTCTCCAGCTTCTGTGGATGATCGGTTTGATGACATTGGGATGGTTGTTTAGCATTTCTGTGCCTTGGTTTCATTAAAATGACAATTTCCCCCTAGAGGAAAAAGACAGGGTTAACAACCACAGCGGATTCCAATCTGGGTTCTCATTCCGGCTCATGGAAATGAGTCTGCCGTTGTTCAGTGGCAGTGGGACTTGGCAGGGATAACGTCATTGCTGTGAATTCTACTTCAGGCAGCTGGGTGTACATCGGACACAGCCTACCGGCAGCCTCTGGAAAATTAACCAAGGAAAAGGAGCGGTCAGCCCTGGAAAGAGGGGAGAGCAAGGTTTTCCTTCCCCACCCTGAGAGTTGGCAAAGGGTTGGCAGACAGGAAGGTTCTGGGTGGAGATCCCGCATGTGGGCTGGCCAGCCCCTGGCACGCTGATGCCCAAGGGTGAGACAAGGCAGAGAGGACAGGGCCACCTGGCAGGAGAAGCCAGGAGAGCACCCCAGCTTGGTAGGTGGAAGCTGAGGAGTCTGAGTGAAAAAGGAAATCAGAGAAATGCAGGCACGTTCCAGGCAGCTCTTCTACCCACAGCTGCAGAGACGACCAACCTGAAGATGTCTCCATGCTGGGGTGCAGTGAAGACCTTCAGGCTGGAGGATGTGGCTGACAGAGTTGTGTAGTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188883:ENST00000340940:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.214
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(35.1=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(37.1=87.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGATACCCAGTCTCCAGG
R:
CCCCTTGAGCAGAGCATGAAG
Band lengths:
343-746
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development