RnoINT0080291 @ rn6
Intron Retention
Gene
ENSRNOG00000006814 | Klrg2
Description
killer cell lectin like receptor G2 [Source:RGD Symbol;Acc:1587495]
Coordinates
chr4:66371511-66372076:-
Coord C1 exon
chr4:66371973-66372076
Coord A exon
chr4:66371632-66371972
Coord C2 exon
chr4:66371511-66371631
Length
341 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TCTCCCCCACCCCACCACAGGTT
3' ss Score
8.36
Exon sequences
Seq C1 exon
GACTTCTTAAGAAAATACCAGGTCACCAAGGGCTCCTGGGTGGGGGCCCGACGAGGCCCTGAAGGCTGGCACTGGACTGATGGGGTTCCCTTGCCATCCCAACT
Seq A exon
GTGAGTAAGTGGGTTCCCTCTATAGCCTCCTTTTGCCCCACCCAGCCTTCAGTGCCGACAAGAGACTCCTTCTACATCCAGCCAAGGTGGGCTAGCACTGGCTTACCCTTCCACCCCAACCCTGATGTAGGTCCCCAACACATTTACCAAGACAGAACTGCCACGGCTGCTTTTCAGATACACAGTCTGTAGAATAGGGATTTGTTGGTTCTGCCATGTAGCTGACCATCGGAAGACACTGCCAGGGCTCTTTCCAGGTATTTCCTGTGTAGTCACTTACACAGTATTGCACCCAGCAACCTGAGTGTTTTCTCTTTTCTCTCTCCCCCACCCCACCACAG
Seq C2 exon
GTTCCTGGAAGACAGTGAGGACCACCCAGACTTCAGCTGTGGGGGTTTGGAAGAAGGCAGGCTCGTGGCTCTTGACTGCAGCTCTCCCAGACCCTGGGTCTGTGCCAAAGGAACCAAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006814:ENSRNOT00000009194:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(35.1=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(37.1=87.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTAAGAAAATACCAGGTCACCA
R:
TCATTTGGTTCCTTTGGCACAGA
Band lengths:
222-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]