MmuINT0088284 @ mm10
Intron Retention
Gene
ENSMUSG00000071537 | Klrg2
Description
killer cell lectin-like receptor subfamily G, member 2 [Source:MGI Symbol;Acc:MGI:1921503]
Coordinates
chr6:38626660-38628188:-
Coord C1 exon
chr6:38628085-38628188
Coord A exon
chr6:38627726-38628084
Coord C2 exon
chr6:38626660-38627725
Length
359 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TCAAACTCACCCCACTGCAGATT
3' ss Score
6.53
Exon sequences
Seq C1 exon
GACTTCTTAAGAAAATACCGGATCACCAAGGGCTCCTGGGTGGGGGCCCGACGAGGCCCTGAAGGCTGGCACTGGACTGATGGGGTCCCTTTGCCATCCCAACT
Seq A exon
GTGAGTACCTGGGTTCTCTCTTTCTCTGTTGTGCTGTAGCCTCCTTTTGCCCCATCCAACCTTTAGTACTGATAGGAGAGAGGGTTAGTGTTGGCTTATCCTTTCACTCCAACCCTGGTGTGGGTCCCCAACACATTCACCCAGACAGAACTGTCATGGCTGCTTTTCAGGTACAAGGTCTGTAGCTTAGGAATTTGGTGGTTCTGCCATGTAGCTGACCATTGGGAGATACTGCCAGGGCTCTTTCCATATATTTCCTGCCTGTATAATGACTGGCACAGTACTGAGCGTGTATAGAAGACAGGTCCCGCAACCTGAGTGTTTTCTCTCTCTCCTCCCTCAAACTCACCCCACTGCAG
Seq C2 exon
ATTCCCAGCAGACAGTGAGGACCACCCAGACTTCAGCTGTGGGGGTTTGGAAGAAGGCAGGCTCGTGGCTCTTGACTGCAGTTCTCCTAGACCCTGGGTCTGTGCCAGAGAAACCAAATGACTTAGTCTCCTGTGTTGGACCTGTCTGGAGTTGTCCCCATGGCTTTTGCTTTGGTGTGACCAAAGTATCTGACAGAAACAACTTCAAAGAGGCAAGAATGAGCAGGCTCACGGTTTCAGAGGGCTGCACCTGGCAGAGCTGCCCAGTCCACCGCAGCAGAGGAAATGCTGGAGCCAGGGGATGGGAACAACCATCAAAGGGCTGTCACTGTTGACATACATCCACACCAGGCTCTACCTCCTCAAACTCCCAAGTCACCCCTAAACCCAGCACTACCAGCTGGGAACAAACCTGCGGCGGACATTTCAGACTCAACCCAGAGCATTCCTATTACAAATCCCCTCAAGATTCATGACTGTCTTGTCTTGTTTTGAGACAGGGTCTCTCTGTACCCCTGGCTGGCCTGGAACTTACTGTGTGGTCCAGGGTGGCCTTCAGTCCCTAGGCAAGCCTCCCAAGTACAGGGATTATAGATGTGTGCCACCACACCCAGCCCATGGCTAACTCGTAATGCAAAATGTATTCAGTCCAATTTCAAGAGACTCTATATATAGTCTTAACAGTTCCAACGTTGTTCAAAGATTCTCCAGGTTGGTAGTCCCCACAGCAGTGTGTGGGGGAGCTGCACCAAACCTCCCCACCTCCCATTTCCTTCTTCAGCCAGCCTCATGCTTCATAGAACTTTCCGCTAGCCAAGCTGGGGCACTTTTGTTCTTCTGACCAGGCGCTCTAACTGCTCCCTATGCTGGTCTCCAGCAGGTGAGTTCCCAAAGGGAGGCACCAAACCTATTCTGAGATGGCTGGCTGGGATCCCATCTAAAGGAGTGGGGTACCCAAGGGAGGTGGTGTCCATCTCCCCTCCCCCCCCCAAAAACCCTACAAGTTCACAGACTAAAATAAAATCTTTTCTCAAAGACTAGACCTTCACAAGATGGTTTAGCAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071537:ENSMUST00000096030:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(35.1=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(37.1=87.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGGTCCCTTTGCCATC
R:
GCCCTTTGATGGTTGTTCCCA
Band lengths:
349-708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types