HsaINT0099913 @ hg19
Intron Retention
Gene
ENSG00000136536 | MARCH7
Description
membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:17393]
Coordinates
chr2:160602281-160605414:+
Coord C1 exon
chr2:160602281-160602448
Coord A exon
chr2:160602449-160604315
Coord C2 exon
chr2:160604316-160605414
Length
1867 bp
Sequences
Splice sites
5' ss Seq
CATGTATGT
5' ss Score
5.71
3' ss Seq
TATCTTCCTTTCAAAAATAGATG
3' ss Score
7.21
Exon sequences
Seq C1 exon
ATTCATCTTGGAGGCATAGTCAAGTTCCTAGATCTTCATCAATGGTACTTGGATCATTTGGAACAGACTTAATGAGAGAGAGGAGAGATTTGGAGAGAAGAACAGATTCCTCTATTAGTAATCTTATGGATTATAGTCACCGAAGTGGTGATTTCACAACTTCATCAT
Seq A exon
GTATGTATAAATTACATCAAGTATAACTTCTCATAATGTTCCATTTTCCTCTTTATGCATGTTACTAAAACAACAGTACAAAGGAGTAAAGTGTATATTTTGTCTTATGAAGATTTCAGAATACCTTAATATTTTTTTCTAGTACTTGTTTTGACCTTAAAAAATAATTTAAAATACAGTCGATGAATATGAGTATCTAGATTCCATCTACCTTTACGTTGTTTAACTTGCATTTTTCCTTTTAAGAACGTCTGTTAGAAAGTAACATACTAAATCGTATATCCTCAAATAGAATTTGCCTGTAACAGATGTAGTTTAATAAATAACTACTTCTGATTATTCTTCTACTTCTGAAATAACTGAAAGTTGAAATCACCATTTTAAGGCATAATTTGCAATTACTTTAGTATAACATGGATGTGCCTCTAGTTTTATTAAATTGACCTCAAGACCCACACTTTGTTTTTGGTTTGTTTGTTCTGAGATGGAGTTTTGCTCTTGTTACCCAGGCTGGGGTGCAATGGCACGACGTCAGCTCACTGCAGCCTTCGCCTCCTGGGTTCAAGCGATTCTCCTGTGTCAGCCTCTCAAGTAGCTGGGGTTACAGGCATATGCCACCATGCCCAGCTAATTTTGTGTTTTTAGTAGAGACTGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCAACCGCCTCAGCCTCCCAAAGTGTTGAGATTACAGGTATGAGCCACTGCACACAGCCACACTTTGTATCATTGTACATAGCCTTAAACTATCATACTAAGTAACTGAAGAAAAAGGTGCTAATTGAAGTTGACAAATATAGTAGGCAGAAATGGAGTTTGATTTACATAGTAGGAAATAATGTTTTGTTTTTAAAGGTTTAGGTTATTTTAATTTATCTTACTGGGGGAAATCTTTATTTATGACAAATGAAAACATTTTATCTGCTTGGCTTTGGATGGTAGAGCTTTAGTAGACAGTATCAATAGCTTTTAGGTTTTGGAGTATAAAAGTACAGGATAGAAATAGATTTAGTTCCTAACATTTACCCTTTCATAAAGCTCCATATATCAGCAGAGTAGTAATTTAGCTCTTACACAGGTTAATGGGTAGTTTCTTTGCAAAGGAATCCTGTAGTATTTCTCATCCCATTTGAAGATTTAAACCACCAGTTAAGGAATCCTTTGAAAAGTGCAGATGTCATAGCCCTATTCTGATTCATAGTTCCTAGCCAGTATTTTAGCAAATATAACACACGTAATTCTAAATATTGGCTAGGAACTATAGGATAAGAACCACAGCTGTTAACCTGAAAGAAAAAAAAATTGGAAAAATTTTTAGCTATTAGCAAGATTTTTCATAAAATTACAAGGGTTTAAAACAGCTTTTTAATTTATTGCACAGAGTAAAAAAAAATCTCCAAAACAGTCTCCCTAGGATGGATTTGCTTTTAATCATTTTAAGAGTCATTTACATTGTATTATTTGGCCTGTTCAAAATCGTCTCAATTTAAATACTAGATATTATTGTATCATACCAAATAATTTCTGATCAATAAATTCAGCTGTTTTAATTTTATCAAATAAAATTTTCATAAGCTCATAATACATTTCTTTTTTATATATTTGTAATGTTGACTTTACACAGCAGTACTGGATTTTACCAGTAGGAATAGAAAGAGAAATACATTTATGTTTTTTCTATAATAATAGTAAACTCTGTAGTTACAATATAACAGTATTAAGTTTGAATCCAGTGCTTCGTTTTGGCATTCAACATAATAAATGCAAATAATAATGCTCAAATTATTTCATGTAATTGGTTATCTTCCTTTCAAAAATAG
Seq C2 exon
ATGTTCAAGACAGAGTTCCTTCATATTCACAAGGAGCAAGACCAAAAGAAAACTCAATGAGCACTTTACAGTTGAATACATCATCCACAAACCACCAATTGCCTTCTGAACATCAGACCATACTAAGTTCTAGGGACTCCAGAAATTCTTTAAGATCAAATTTTTCTTCAAGAGAATCAGAATCTTCCCGAAGCAATACGCAGCCTGGATTTTCTTACAGTTCAAGTAGAGATGAAGCCCCAATCATAAGCAATTCAGAAAGGGTTGTTTCATCTCAAAGACCATTTCAAGAATCTTCTGACAATGAAGGTAGGCGGACAACGAGGAGATTGCTGTCACGCATAGCTTCTAGCATGTCATCTACTTTTTTTTCACGAAGATCTAGTCAGGATTCCTTGAATACAAGATCATTGAATTCTGAAAATTCTTACGTTTCTCCAAGAATCTTGACAGCTTCACAGTCCCGTAGTAATGTACCATCAGCTTCTGAAGTTCCCGATAATAGGGCATCTGAAGCTTCTCAGGGATTTCGATTTCTTAGGCGAAGATGGGGTTTGTCATCTCTTAGCCACAATCATAGCTCTGAGTCAGATTCAGAAAATTTTAACCAAGAATCTGAAGGTAGAAATACAGGACCATGGTTATCTTCCTCACTTAGAAATAGATGCACACCTTTGTTCTCTAGAAGGAGGCGAGAGGGAAGAGATGAATCTTCAAGGATACCTACCTCTGATACATCATCTAGATCTCATATTTTTAGAAGAGAATCAAATGAAGTGGTTCACCTTGAAGCACAGAATGATCCTCTTGGAGCTGCTGCCAACAGACCACAAGCATCTGCAGCATCAAGCAGTGCCACAACAGGTGGCTCTACATCAGATTCGGCTCAAGGTGGAAGAAATACAGGAATATCAGGGATTCTTCCTGGTTCCTTATTCCGGTTTGCAGTCCCTCCAGCACTTGGGAGTAATTTGACCGACAATGTCATGATCACAGTAGATATTATTCCTTCAGGTTGGAATTCAGCTGATGGTAAAAGTGATAAAACTAAAAGTGCGCCTTCAAGAGATCCAGAAAGATTGCAGAAAATAAAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136536-MARCH7:NM_022826:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=NA C2=0.807
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGCATAGTCAAGTTCCT
R:
TGCTTCGGGAAGATTCTGATTCT
Band lengths:
355-2222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)