GgaINT0050123 @ galGal4
Intron Retention
Gene
ENSGALG00000012584 | MARCH7
Description
membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:17393]
Coordinates
chr7:36196852-36199955:+
Coord C1 exon
chr7:36196852-36197016
Coord A exon
chr7:36197017-36199163
Coord C2 exon
chr7:36199164-36199955
Length
2147 bp
Sequences
Splice sites
5' ss Seq
CATGTATGT
5' ss Score
5.71
3' ss Seq
CCTCTGCTTTCTTGCAACAGATT
3' ss Score
9.33
Exon sequences
Seq C1 exon
ATTCCTCTTGGAGATATAGTAGGATTCCTAGATCTTCATCTGTGATGTTTGGTTCCCTGGGAACTGAGCTAGTGAGAGAGCGAAGAGAGTTAGAAAGAACAGATCAGTCCTTTAATAATCTGGTGGATCATAGCTACAGGAACAGTGACTTTTCATCTTCAGCAT
Seq A exon
GTATGTATTGTAGAAATTACAGCTTGTAAACGCATAGGCTGCATGCCTATTATTTTCTTCCCATGTACTCTGAAGTTTTTTTCAAAATACGAAGACAGTAACATCTATTTAATTTTTAAAATACTCTTTTAAATAAAGTTTCCATGTACTGGCTAAGACATCAAATGTTATATAAAGGGTTTAGCTTGTATAGATGCACTCAGTCATAAGAAAATGGTATCGGTGCTTGCTATTGTAATAGTGTTTGTATCACAAACACTATTATATTCACAATTGTAAGCCTCCTTTCTAATTGTTCATTTTCAGATCTCCATCTATTTTTCCATACCTAAGTAAAAAGTGTTAACTGACTCAGGAAAGGATTTTCACAATGTACCCATATCGTATTCTCTCTTTTATTTGGTTTCTTGAGTAGTTATTAAGGAAAACTGCTATATCATTGACAACACAAGTGCATAAATATGTAATACATACCTCACTGTTAAGGTGGGGGTTTGTTCAGTAGTAACTGCTAGGACTAGTATGAATTTGTGCATTTGAAGATCCTCCAATCCACTGCCCTACTAAAGTAGGTTGCCCAGGAAAGTGTCCAGACAGGTCTTGTATATCTGCAGAGAATGAGATTCCACAATCTGTCTGGGCAGACTGTTCCCATGCTCTGTCACTCTCACAGTAAGGAATCATTTCTTTATGTTTGTTTGGAACTCCCCGGGCTCCAGTTTGTGCCTGTTGCCTATTGTCCTGTCACTTGGCACCACAGAGCAGAGCCTGTCCCTGTTCTACTGACCTTTAGATATCAATCAGCACTGGTCAGATCCTCTCCCAGCCTTCTCTTCTCTGGGCTGAACAGGCCCAGGTCTCTCAGCTTTTCATCATAAGGGAGATGCTTCAGGCCCTGATCATTGTAGCTCTCTGCTCCAGCAGCTGACTGCCTGAACTGGAGAGCCCGAAACTGGACACAGTAGAGGATCTGCTCATGACCTTCCCTGGCACTGATGTCAGACAGGCCTGTAACTTTGTGGAATCATAGAATCACCAAGGTTGGAAAAGACCTACAGGATCATTCAGTCCAGCCATCCACCAATCACCAATAATTCTCGCTAATTTACTGGATTCTTCGTCCCACCCTTTCTGTAGATGGGTGTTATGTTTGCTGACCTTGTCAACTGGGAGCTCCCTGGTTAGCTAAGACTGCTGATAATTTTTTTTTAAAGTGCCTTAGAGTGCCACTTCTCCAGCTCCTTCAATACCCTTGGGTGGATACTGTCTGGCCCCATACATTTGTGTGTGTTCAAGAGTTTTAGTAGGCTGCTAACTATTTTCCCTGGGATTATGAGGACTTCATTCTGTTCCCTGTTTCTCTGTATTCAATCTCAGCAGACTGAGTACCCCAAGAAAATTACAGCTTACTAGTAAAGACCTATTCATTAAGTAGGAGTTAAGTACTTCAGCCTTATTTCATGTTTGTTTCCTTCTGAAACCAGTAAAGGATGAAAATTCTCTAAAATCAGATGCACATTTAATTTAGATTCCATTTGATTTCTGTTATCCAAAGTCACTAATTTTCTGCTACCTTCAAGTAGTGTTTTTGACCACAGTTCTTGATGGTGTTACACAGAGGGCAGTTTGGGAAGTTTGTTGTAACAAATGGGGGATATGTTTCACTTTACCCATGCATTTGTTAAGGTGCTTTGGTGTCTACTGTATTCCTCCTGCAGTATTAATTAACCTGTCTTACTCAGTCTGTGGGCAGAGTGAACCTTTAAGTTATGAATAGCATTGTGTATGTAGTTGGTGGGTTGTCGTTTCATTTTGCTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTACATTGAAGTGATGTTCTTATATAGCTTCTGACAGATGACTAGTGTTCACTATTTTCACACTGGTATAAGACGGTGAATCATACCTTGATAATCTGAAGGTTTTTAGAGGGTTTTAGATTCCAGATGGTTTTAGGAGACTGACGACAGTCCTGGCTTCAGTTTGATGATAGAATTATTAAATGTAAATTTAAACTTAATATTATTCTGTAATTTACTTGCTGACACTTAGGAATTACCCATAATATAATAACTAGGACACATCTTGTCATATTATTTTCCTCTGCTTTCTTGCAACAG
Seq C2 exon
ATTTTCAGGATAGGCCTGCCTCTACATATGCGGAAGGAGCAAGACCAAAAGAGAACTCATTAAGTGCTTTGAGGCTAAATGCATCCATGAACCACCAGTTGCCTTCTGGTCATCAGACATCTTTTTTCAACAGAGACTCTAACATAAGATCTTCAAGGACCAGCTATTCTTCAAGACAAAGGAGAAATGAAATAGAATCTCCCCAGAGGAACATACACCCGGCATTTTCTCATTCTACCACTAGAGGCGAAACTTCTTCAAGTAGTTCTGAAAGGGTTTTCTCTTCTCAGAGGTCACTGAATGATGCTGCAGCTGACACTGAAGGAAGACGCACAACCAGACAGTTGCTGTCTCGTTTAGCATCTAGTATGTCATCTACATTTTTCTCTCGAAGATCTAGCCAAGACTCATTGCAGACAAGGTCATTAGGCTCTGAAGAGTCATCTCTTGTCCCAAGAGTTCAAGCTTCTACTCTGTCTAGCACTAATGGAGCTGCAACTCCTGAAGCTCCAGGACTTCATACATCTGAAGCTTCTCAGGGATTTAGTTTTCTGAGACGAAGATGGGGTTTGTCAGGAGTTTCACAGAGTCTTAACACTGATTCAGATGGGGAAAGCTACAGACCAGACTCTGAAAGTAGGAGCACAGGGTCCTGGTTGTCATCATCTTTGAGGAACAGATGTACACCACTCTTCTCCAGAAGACGGAGAGAAGGAAGAGATGAGTCTGCAAGAATCTCTACCTCTGATGCAGCTGCTAGATCACAACATGTTTTGAGAAGAAGAGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012584:ENSGALT00000020547:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.842
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]