GgaEX0019034 @ galGal4
Exon Skipping
Gene
ENSGALG00000012584 | MARCH7
Description
membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:17393]
Coordinates
chr7:36195083-36199955:+
Coord C1 exon
chr7:36195083-36195254
Coord A exon
chr7:36196852-36197016
Coord C2 exon
chr7:36199164-36199955
Length
165 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTGTTTCTTTCTAGATT
3' ss Score
11.56
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
TCTACATCTTCCTCCTCTCATTTTACATCTGGGTGTTATGATGATTCTGAAAGAACTCAGGGAGCATATTCAAGACTGCATAGCCAGCAGCAAGATAGTGATTCAAAGCGACCTAAGCTGTCTTGTACATCTACCTCTTCTGTGAGAAGTAATGGCTTGACTGCCTTTTCAG
Seq A exon
ATTCCTCTTGGAGATATAGTAGGATTCCTAGATCTTCATCTGTGATGTTTGGTTCCCTGGGAACTGAGCTAGTGAGAGAGCGAAGAGAGTTAGAAAGAACAGATCAGTCCTTTAATAATCTGGTGGATCATAGCTACAGGAACAGTGACTTTTCATCTTCAGCAT
Seq C2 exon
ATTTTCAGGATAGGCCTGCCTCTACATATGCGGAAGGAGCAAGACCAAAAGAGAACTCATTAAGTGCTTTGAGGCTAAATGCATCCATGAACCACCAGTTGCCTTCTGGTCATCAGACATCTTTTTTCAACAGAGACTCTAACATAAGATCTTCAAGGACCAGCTATTCTTCAAGACAAAGGAGAAATGAAATAGAATCTCCCCAGAGGAACATACACCCGGCATTTTCTCATTCTACCACTAGAGGCGAAACTTCTTCAAGTAGTTCTGAAAGGGTTTTCTCTTCTCAGAGGTCACTGAATGATGCTGCAGCTGACACTGAAGGAAGACGCACAACCAGACAGTTGCTGTCTCGTTTAGCATCTAGTATGTCATCTACATTTTTCTCTCGAAGATCTAGCCAAGACTCATTGCAGACAAGGTCATTAGGCTCTGAAGAGTCATCTCTTGTCCCAAGAGTTCAAGCTTCTACTCTGTCTAGCACTAATGGAGCTGCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012584-'9-13,'9-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.569 A=0.375 C2=0.842
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGAAGTAATGGCTTGACTGC
R:
GGGTGTATGTTCCTCTGGGGA
Band lengths:
251-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]