DreEX0045044 @ danRer10
Exon Skipping
Gene
ENSDARG00000057772 | march7
Description
membrane-associated ring finger (C3HC4) 7 [Source:ZFIN;Acc:ZDB-GENE-080204-121]
Coordinates
chr6:11555624-11560912:-
Coord C1 exon
chr6:11560759-11560912
Coord A exon
chr6:11560476-11560658
Coord C2 exon
chr6:11555624-11556719
Length
183 bp
Sequences
Splice sites
3' ss Seq
AAAGTTATCCTTGTGTTTAGGTT
3' ss Score
7.01
5' ss Seq
TGTGTATGC
5' ss Score
0.72
Exon sequences
Seq C1 exon
ACAGACTCTGAGAGAAGGCTGGGAACCTACTGCGGACTTCTTGGCACTTCCCAAGACAGCGAGTCTAAAAGAGCCAAACTTTCCTACACGAATAGAGAAGTTTATTCCAGATCCCCATCCACATCTAAGCCTGCCACCTCTTACTCCACTCTAG
Seq A exon
GTTCTTCATGGAAATCTAGCATTAGTCCTTTGTCAAGATCATCCTCTTCATCTTCATCCTCTTCGGTGTCCACTCAATCAGAGGGTCTGTGGGCCCGCAGAGATTTGGAGAAGAGGGTGGATTCAGGACTGTCCTCACTGGGGGAGTCCAGTTACCGGCCCAGTAGCCTGACATCTTCATTGT
Seq C2 exon
ATCGTTCAGAACGTGTTGCTTCTACCTATGCACAAGGTGCTCGACCCAAAGATAGCCAGTACTCGTCCCACAGAGAGAACAGTTCATCTAGTCGCCGCATCCCATCCGAGTACATCCCCTCTCCTCTAGAGCGCAACTCCCAAAGGCTAACCTCTGATTACCAGTCTAATTTATTCCCTCGGGATACACCACGCTCCAGTTCCACTAGAACCTCCACCTCTGTATCGGACACCTCCCACCATTCATCTTGGAGTTCCACCCCTTACACAGCTCTCTCTGCCTGTACCTCCAGCCCACCTTCCATTAGCCCTGCTCCTACTCCACTGCCTGCTCAGAATACAGGAGAATCGGATGGTAGAGGAACAACCAGGCGTCTCCTATCCCGCCTTTTCTCCCGACGCTCCAGTCAGGAGTCCAACTCCACTGCCAGCACTGCCTCCGATTCAAGGTCCTACGACTCTAGCCCAGATGAAGCCCCGCCCACTGAAGCTCCTCCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057772_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=0.597 C2=0.951
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCACCTCTTACTCCACT
R:
GGTGTCCGATACAGAGGTGGA
Band lengths:
258-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]