GgaEX0019034 @ galGal3
Exon Skipping
Gene
ENSGALG00000012584 | MARCH7
Description
NA
Coordinates
chr7:38334462-38339656:+
Coord C1 exon
chr7:38334462-38334633
Coord A exon
chr7:38336231-38336395
Coord C2 exon
chr7:38338543-38339656
Length
165 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTGTTTCTTTCTAGATT
3' ss Score
11.56
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
TCTACATCTTCCTCCTCTCATTTTACATCTGGGTGTTATGATGATTCTGAAAGAACTCAGGGAGCATATTCAAGACTGCATAGCCAGCAGCAAGATAGTGATTCAAAGCGACCTAAGCTGTCTTGTACATCTACCTCTTCTGTGAGAAGTAATGGCTTGACTGCCTTTTCAG
Seq A exon
ATTCCTCTTGGAGATATAGTAGGATTCCTAGATCTTCATCTGTGATGTTTGGTTCCCTGGGAACTGAGCTAGTGAGAGAGCGAAGAGAGTTAGAAAGAACAGATCAGTCCTTTAATAATCTGGTGGATCATAGCTACAGGAACAGTGACTTTTCATCTTCAGCAT
Seq C2 exon
ATTTTCAGGATAGGCCTGCCTCTACATATGCGGAAGGAGCAAGACCAAAAGAGAACTCATTAAGTGCTTTGAGGCTAAATGCATCCATGAACCACCAGTTGCCTTCTGGTCATCAGACATCTTTTTTCAACAGAGACTCTAACATAAGATCTTCAAGGACCAGCTATTCTTCAAGACAAAGGAGAAATGAAATAGAATCTCCCCAGAGGAACATACACCCGGCATTTTCTCATTCTACCACTAGAGGCGAAACTTCTTCAAGTAGTTCTGAAAGGGTTTTCTCTTCTCAGAGGTCACTGAATGATGCTGCAGCTGACACTGAAGGAAGACGCACAACCAGACAGTTGCTGTCTCGTTTAGCATCTAGTATGTCATCTACATTTTTCTCTCGAAGATCTAGCCAAGACTCATTGCAGACAAGGTCATTAGGCTCTGAAGAGTCATCTCTTGTCCCAAGAGTTCAAGCTTCTACTCTGTCTAGCACTAATGGAGCTGCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012584-'5-10,'5-9,6-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.629 A=0.375 C2=0.820
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGAAGTAATGGCTTGACTGC
R:
GGGTGTATGTTCCTCTGGGGA
Band lengths:
251-416
Functional annotations
There are 0 annotated functions for this event