BtaEX0021427 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008755 | MARCH7
Description
Bos taurus membrane-associated ring finger (C3HC4) 7 (MARCH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001100317]
Coordinates
chr2:36697193-36713636:-
Coord C1 exon
chr2:36713472-36713636
Coord A exon
chr2:36703110-36703262
Coord C2 exon
chr2:36697193-36697362
Length
153 bp
Sequences
Splice sites
3' ss Seq
ACTTATTCAATTATTTTAAGATT
3' ss Score
5.67
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
GAAACCTTAAGAATGGAGTCTAAACCTTCAAGGATTCCAAGAAGAATTTCTGTTCAACCTGCTAGCTCTTTAAGTGCTAGGTTGATGTCTGGAAGCAGAGGAAGTGGTTTAAATGATACCTATCACTCAAGGGACTCTTCCTTTCGACTGGATTCGGAATATCAG
Seq A exon
ATTCTACTTGGAGGCATAGTCAAGTTCCCAGGTCTTCATCAGTGGTACTTGGATCATTTGGAACTGACTTGATGAGAGAGAGGAGAACAGATTCCTCCATTAGTAATCTTGCGGATTATAGTCACCGAAGTGGTGATTTCACAACTTCATCAT
Seq C2 exon
CCTCCTTTTAGAGGACTCTGAAGAAGAAGAAGGTGATTTATGTAGAATTTGTCAGATGGCAGCTGCATCATCCTCTAACTTGCTGATAGAGCCATGCAAGTGCACCGGAAGTTTACAGTATGTCCACCAAGAGTGTATGAAGAAATGGTTACAGGCCAAAATTAACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008755_MULTIEX2-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.961 A=0.904 C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF129062=RINGv=PU(76.8=74.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGATGTCTGGAAGCAGAGG
R:
TGGCCTGTAACCATTTCTTCA
Band lengths:
244-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development