RnoEX0052743 @ rn6
Exon Skipping
Gene
ENSRNOG00000006241 | March7
Description
membrane associated ring-CH-type finger 7 [Source:RGD Symbol;Acc:1308993]
Coordinates
chr3:46305612-46310724:+
Coord C1 exon
chr3:46305612-46305807
Coord A exon
chr3:46308036-46308203
Coord C2 exon
chr3:46309629-46310724
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTTCATTACTTTACTTTAAGATT
3' ss Score
5.31
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
TCTGCCTCAGCGTCAGCATCTGCATCACCATATCAGTCTACTTGGTACAGTGAGTCTGAGATAACTCAGGGAGCACGGTCACGGTCACAAAACCAGCAAAGGGATCATGATTCAAAAAGACCTAAACTTTCTTGTACAAACTGTACGTCTACCTCAGCTGGGAGAAATATTGGAAGTGGTTTAAATACACTGTCAG
Seq A exon
ATTCTTCTTGGAGGCCTGGTCAAGTTCCGAGATCTTCTTCAATGGTCCTTGGTTCATTTGGAACAGACTTGATGAGAGAGAGGAGAGATCTGGAGAGGAGAAGGGACTCCTCCATTAGCAGTCTTATGGACTATAGTCACCGGAGTGGGGATTTCACAGCTCCAGCAT
Seq C2 exon
ATGTTCAAGAAAGAGTTCCTTCTTCATATTCACAGGGAGCAAGACCAAAAGAGAATGCCGCGAACACTTTACAGTTGAATTCATCCACCAATCACCAACTGCCTTCTGAGCATCAGACAGTACCAAGTTCTAGGGACTCTAGTAGAAGTTCTTTCAGATCCCATTTTTCTCCAAGACAATCAGAATCTTTTCGAAACAGTTCACATCCTGCATTTTCATATCTTTCAAGTAGAAATGAAACTCCAACTATAAGCAGTTCAGAAAGGGCTGGCTCGTCTCAGAGACCATTTCAAGAATCTTCTGACAATGAAGGTAGGCGTACAACTAGGAGATTGCTGTCACGGATAGCTTCTAGCATGTCATCTACCTTCTTTTCACGAAGATCTAGTCAAGATTCCTTAAATACAAGGTCACTGAGTTCCGAAAATTATATTTCTCCAAGAACCCTGACTTCACAGTCTCGGAATAATGGAGCATCATCTTCTGAAGTTAATGATGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006241-'12-9,'12-8,14-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.860 A=0.982 C2=0.809
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000008464fB8411
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAGCATCTGCATCACCAT
R:
AGTGTTCGCGGCATTCTCTTT
Band lengths:
254-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]