MmuINT0095814 @ mm10
Intron Retention
Gene
ENSMUSG00000026977 | March7
Description
membrane-associated ring finger (C3HC4) 7 [Source:MGI Symbol;Acc:MGI:1931053]
Coordinates
chr2:60232200-60234997:+
Coord C1 exon
chr2:60232200-60232367
Coord A exon
chr2:60232368-60233898
Coord C2 exon
chr2:60233899-60234997
Length
1531 bp
Sequences
Splice sites
5' ss Seq
CATGTATGT
5' ss Score
5.71
3' ss Seq
TTCCCTTCTTTCAAAAATAGATG
3' ss Score
7.81
Exon sequences
Seq C1 exon
ATTCTTCTTGGAGGCATAGTCAAGTTCCCAGATCTTCATCAATGGTACTTGGTTCATTTGGAACAGACTTGATGAGAGAAAGGAGAGATTTGGACAGGAGAAGAGAGTCCTCCATCAGCAATCTTATGGATTATAATCACCGAAGTGGTGATTTCACAACTTCATCAT
Seq A exon
GTATGTAGAAACTATATTGTTAAATATAGCTTATGTGTTATTACAAATGTTCCCTGTGTCATTATAAAACTACACTGGAGGGAATGAAATGAATTTTAGTTTCATACGGAGATATCAGAACTGTTTAGTTTTTTTTTTTTTTTTTTTTTTTTTTAGTATCTTTGTTTATTCTAAAAAATATAAACAGTCTAAAACATGTTCTTGACTATTTGGATTCTCTATGCTTTAAAAAATCTTAATATATGTTAATAAAGTATTATTTATAGCTAATTCTTCTATAGGATAGCGTGACTTGTCTATAACAGTTTTAATGAGTACTTTTAGCTGAATTATGAACTAACTCTATGTTGTGCTGTTTGTCACTATTTTATGTGTATGAGTGTATTTGCCTACTTGTGTGGCTATGCACTACTTGTGAGCCTAGTGCCCAGGGAGCAATACTGTGACAGATCCTATAGATTTGAGTTGCAGATGGCTGTGAGCCACCCTGTGGGTACAGGGAATAGAACCCACGTCCTCAAAAAAAAAAAAAAAAAAGCTAGTGCTCTTTCTAGCCCCTGACGTCATCATTTTAAGGATTACGTGGAACTGTATGATTTACTTGATTATAATTACATTTTGAAATGTACGGTTTTTCTCTCTTGCGTAAACTTAGCTTTTCAGAAGTGATCATATTTAAGTGAGTAACAGAAGAGTGCTGCTCAGAGTTAACAGTAACGTGGAGGAGTGGGGGTGGTGCTTCTTTTAATCACAGTCAGCAGATATAGGCTCAGCCTGTGGATAGTTTATTCTTTTGTGGTCCCAATAAGTTAATAGAGTAATAAATGTACCTCTTACACGGGGTAGATGGAAAGTGTTTTTTCATAAAAGACTAGTAGTGTTTGTGATCTCCACTCAGATTGAAACGGCCAGTTCAGGAGGTCTGTTTTTTATCTGGTTGACCTTGAGGCAAGGCCACCCTGAAAAGCAGAGGAACCTGGTGATCCTCCCTCTGCCACCCAAGTGCTGACAGGATCCCTCCTCCCTGTCTTGCTTTTGAAAATGCAGATTAGCAGAGGCCTGGATTGAGCACAGTTCCAGCCAGTGTTAAAGGACTAGACATTCTTACTTGTTAGCAAGGCATAGCATGAAATTATATGGGCCCTAAACATTTATGTAAAGTAATCTTCATATTTATTGCATAGAATAAGAAGAATCTTGAGAACTGTTTTCCTGGAATGCATATTTTTTTAACCATTACACTGTATTATTTGGCTTAAAGTTGTGTGTCAGTATCCGTTTCCCATTAATGCATTTCACTTGTGTCATCAGCTCTGTTTTTGAATTTGCAGTACTCTACTTTGAGTTTGTACTCTACTCAGGAGTACTTCAGAAGTAAATTTTTTCTTATAATAGTTAAACTGTTTGTTATAAGATAGATAGCATTTCATTTCAAACCCTAGTCTTTCAGTTTGGCAGGAGTCAATAAATGTGCATTCAATAATGCTTAAATTATTTCATAATTGGTTACCTTCCCTTCTTTCAAAAATAG
Seq C2 exon
ATGTTCAAGAAAGAGTTCCTTCTTCATATTCACAGGGAGCAAGACCAAAAGAGAATGCAGTGAGCACTTTACAGTTGAATTCATCATCCACCAATCACCAATTGCCTTCTGACCATCAGACAGTACCAAGTTCTAGGGACTCCAGTAGAAGTTCTTTCAGATCACATTTTTCTCCAAGACAATCAGAATCTTTTCGCAACAGTTCACATCCTGCATTTTCATATTTTTCAAGTAGAAATGAAACTCCAACTATAAGCAATTCAGAAAGGGGTTCATCTCAGAGACCATATCGAGAATCTTCTGACAATGAAGGTAGGCGTACAACTAGGAGATTGCTGTCACGGATAGCTTCTAGCATGTCATCTACTTTTTTCTCACGAAGATCTAGTCAAGATTCCTTGAATACAAGATCTTTGAGTTCTGAAAATTATATTTCTCCGAGAACCCTGACTTCACAGTCTCGGAATAATGGAACCTCCTCGTCCTCTGACGTCAGTGAGGGCAGGGCAGCTGAAGCATCTCAGGGATTTAGATTTCTTAGGCGAAGATGGGGGTTGTCGTCGCTCAGCCAAAATCATAGCTCTGAACCAGAGGCAGAAAATTTTAACCAAGAATCAGAAGGTAGAAATTCAGGACCATGGTTGTCTTCTTCACTTAGAAATAGATGCACACCTTTGTTCTCGAGAAGGAGGCGAGAGGGAAGGGATGAGTCTTCAAGAATGTCTACGTCAGATGTACCACCTAGATCTCATATTTTCAGAAGAGATTCAAATGAAGTAGTTCATCTTGAAGCACAGGGTGACTCCCTTGGGGCTGCTGCCAACCGACCACAAGCATCTGGAGCGTCAAGCAGTGCTGCTGCAGGTGGCTCCACCCCAGAGTTGCCTCAGGGTGGAAGAAATCCAGGACTAACAGGGATTCTTCCTGGCTCCTTGTTCCGGTTTGCAGTCCCACCAGCACTCGGCAGTAATCTGGCTGACAATGTCATGATTACTGTAGATATTATTCCTTCTGGTTGGAATTCAACTGATGGGAAAAATGATAAAGCTAAAAGTGCACCTTCAAGAGACCCAGAAAAACTTCAGAAAATCAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026977:ENSMUST00000102748:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=NA C2=0.816
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAGAGTCCTCCATCAGCA
R:
TGGTCTCTGAGATGAACCCCT
Band lengths:
357-1888
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types