RnoINT0089728 @ rn6
Intron Retention
Gene
ENSRNOG00000006241 | March7
Description
membrane associated ring-CH-type finger 7 [Source:RGD Symbol;Acc:1308993]
Coordinates
chr3:46308036-46310724:+
Coord C1 exon
chr3:46308036-46308203
Coord A exon
chr3:46308204-46309628
Coord C2 exon
chr3:46309629-46310724
Length
1425 bp
Sequences
Splice sites
5' ss Seq
CATGTATGT
5' ss Score
5.71
3' ss Seq
TTCCCTTCTTTCAAAAATAGATG
3' ss Score
7.81
Exon sequences
Seq C1 exon
ATTCTTCTTGGAGGCCTGGTCAAGTTCCGAGATCTTCTTCAATGGTCCTTGGTTCATTTGGAACAGACTTGATGAGAGAGAGGAGAGATCTGGAGAGGAGAAGGGACTCCTCCATTAGCAGTCTTATGGACTATAGTCACCGGAGTGGGGATTTCACAGCTCCAGCAT
Seq A exon
GTATGTAGACACTGTGTTGTTACGTACAGCTTGTGTGTTACTGCAGTTGTTCTCTGTGTCATTAATCAGAATGGAGGAAATGACGTGAAGTTTAATTTCTTATGGAGATATCGGAACTGTAATGTTCTTTAGTATCTTTGTTTTACTCTAAAAAATATAAACAGTCTAAAACCTGTTCTTGAGTATTCAGGTTCTGTCTGCTTTTAAAAAAATTTATACATGTTAATAAGTATTACCAGCTAATTTTTTTCTACAGTGTGAGTTGTCTATAACAGTTTTAATGTGTACTTCTAGCTGGATTATGAAATAACTATATGCTGGTTACACTGTTTAATGGTACATGTATGACTATGCACTACTGTGGGCCTAGTGCCCAGGGAGTGAGTACTGTGACAGAGCCTCTAAATTTGAGCTGTGAGTCACTGTGTAGGTGCAGGGAATAGAACCCATGTCCTTCAAAAAAGCTAGTGTTCTTAACTGCTGAGCCATCTTCCTAACCCCTCAGCTTACCATTTTAAGGATTATGTGGACCTGTGTGATTGTCTTGATTTTAATTAAATTTTGAAACATATGGTTTTTCTCACATTGACTTGAGCTTTTCAGAGTTGACCGTCTTAGTACTGAACACAGAAGGGTGCTGCTCAGTTAGCAGTGCCGTGCAGGAGTGGGGCTTGTGCTCCTTTAAGTCACAGTCAGATTAAACTCCACAGTTTAATACAGTGATAAATGTGCCTCCTACCCAGGTATATAGGAAGTGTTTCTTATCCCCACTCAGATTGAAACAACTAGTTAAGGAGGTCTATTTTTATCTTGTTGACCTTGAGGCAAGGCCACCCTGTAACCCAGAGGAGCCTGGAACTCTGATTCTCCTCCCTCTGCCACCAAAGTGCTGACAGTGTCCCTCCTCCCTGCCCTGCTTTTGAAAATGCACATTAGCAGAGGCCTGTATTGAGCACGGTTCCAAGCCACTGTTAAAGGGCTAGACATTCTTACCTGACATAACATGAAATCATATGGGCAATAACATTCATGTAAAATAATCTTCATATTTTTTGCATAGAATAAGAAGAATCTCCAGAACTGTTTTCCTGGAATGTATTTTTTATCATTACACTGTATTACTTGACCTAAAGTTGTGTATCAGTATCAGTTTGCCTTTAACTTGCCTCATCGGCTTTGTTGAGTAAGCTTTCATACTTGTGTTTGAATATGTAGACCTCTACTTTGAGTTTGTACTCTACCTTGGGAGTACTTCAGAAGTAAATTTTTTTCTATATTTTTTTCTATAATAGTTCCTGTATAGTTACATGGTAGCACTATTCATTTCAAACCCTAGTCTTTCAATTTGGCAGGAGTCAATAAATGTGTATTCAATAATGCTTAAATTATTTCATAATTGGTTACCTTCCCTTCTTTCAAAAATAG
Seq C2 exon
ATGTTCAAGAAAGAGTTCCTTCTTCATATTCACAGGGAGCAAGACCAAAAGAGAATGCCGCGAACACTTTACAGTTGAATTCATCCACCAATCACCAACTGCCTTCTGAGCATCAGACAGTACCAAGTTCTAGGGACTCTAGTAGAAGTTCTTTCAGATCCCATTTTTCTCCAAGACAATCAGAATCTTTTCGAAACAGTTCACATCCTGCATTTTCATATCTTTCAAGTAGAAATGAAACTCCAACTATAAGCAGTTCAGAAAGGGCTGGCTCGTCTCAGAGACCATTTCAAGAATCTTCTGACAATGAAGGTAGGCGTACAACTAGGAGATTGCTGTCACGGATAGCTTCTAGCATGTCATCTACCTTCTTTTCACGAAGATCTAGTCAAGATTCCTTAAATACAAGGTCACTGAGTTCCGAAAATTATATTTCTCCAAGAACCCTGACTTCACAGTCTCGGAATAATGGAGCATCATCTTCTGAAGTTAATGATGGCAGGGCGTCTGAAGCGTCTCAGGGATTTAGGTTTCTTAGGCGAAGATGGGGTTTGTCGTCTCTTAGCCAGAATCATAGCTCTGAACCAGATGCAGAAAACTTTAACCAAGAATCAGAAGGTAGAAATACAGGACCATGGTTGTCTTCCTCACTTAGAAATAGATGCACACCTTTGTTCTCTAGAAGGAGGCGAGAGGGAAGAGATGAGTCTTCAAGAATATCTCCATCAGATGTACCTCCTAGATCTCATCTTTTCAGAAGAGAATCAAATGAAGTAGTTCACCTTGAAGCACAGGGGGACTCCCTTGGGGCAGCTGCCAGCAGACCACAAGCATCCGGAGCATCAGGCAATGCTTCTGCAAGTGGATCCACACCAGATTTGCCACAGGGTGGAAGAAATACAGGAATAGCAGGGATCCTTCCTGGCTCCTTATTCCGGTTTGCAGTTCCGCCAGCACTTGGCAGTAACCTGACTGACAATGTCACGATTACCGTAGATATTATTCCTTCAGGTTGGAGTTCAGCTGATGGGAAAAGTGAAAAAGCTAAAAGTGCACCTTCAAGAGACCCAGAAAAACTTCAGAAAATCAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006241:ENSRNOT00000008464:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=NA C2=0.809
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAGAGGAGAAGGGACTC
R:
CCAGCCCTTTCTGAACTGCTT
Band lengths:
351-1776
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]