HsaINT0105699 @ hg19
Intron Retention
Gene
ENSG00000173531 | MST1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:HGNC Symbol;Acc:7380]
Coordinates
chr3:49721983-49722317:-
Coord C1 exon
chr3:49722171-49722317
Coord A exon
chr3:49722090-49722170
Coord C2 exon
chr3:49721983-49722089
Length
81 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TGCCCCCATTCTTGCTAAAGATC
3' ss Score
5.43
Exon sequences
Seq C1 exon
CCATATGCCTCTCACGGGCTATGAGGTATGGTTGGGCACCCTGTTCCAGAACCCACAGCATGGAGAGCCAAGCCTACAGCGGGTCCCAGTAGCCAAGATGGTGTGTGGGCCCTCAGGCTCCCAGCTTGTCCTGCTCAAGCTGGAGAG
Seq A exon
GTATGTGGACAACCTGGGAGGGTGTGAGGTGGGGCTGGGCCTTGTGGCCTCAGACCCTGAGTGCCCCCATTCTTGCTAAAG
Seq C2 exon
ATCTGTGACCCTGAACCAGCGTGTGGCCCTGATCTGCCTGCCCCCTGAATGGTATGTGGTGCCTCCAGGGACCAAGTGTGAGATTGCAGGCTGGGGTGAGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173531-MST1:NM_020998:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(16.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCAGAACCCACAGCATG
R:
GCACCACATACCATTCAGGGG
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)