MmuINT0101359 @ mm10
Intron Retention
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:108084061-108084394:+
Coord C1 exon
chr9:108084061-108084207
Coord A exon
chr9:108084208-108084287
Coord C2 exon
chr9:108084288-108084394
Length
80 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
AACCCTCATTCCCACTAAAGACC
3' ss Score
3.12
Exon sequences
Seq C1 exon
CCACGAACCTCTCACAGGATACGAGGTATGGTTGGGTACAATTAACCAGAACCCACAGCCTGGAGAGGCAAACCTGCAGAGGGTCCCAGTGGCCAAGGCAGTGTGCGGCCCTGCAGGCTCCCAGCTTGTTCTGCTCAAGCTGGAGAG
Seq A exon
GTATGTGGATGTGTTGAGAGGGTGTGAGGCAGGGCTAGCCTCATGGTCATAGGTCCTGAAAACCCTCATTCCCACTAAAG
Seq C2 exon
ACCTGTGATCCTGAACCATCACGTGGCCCTGATTTGCCTGCCTCCTGAACAGTATGTGGTACCTCCAGGGACCAAGTGTGAGATCGCAGGCTGGGGTGAATCCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591:ENSMUST00000035211:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(16.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACCCACAGCCTGGAGAG
R:
TCTCACACTTGGTCCCTGGAG
Band lengths:
183-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types