RnoINT0094899 @ rn6
Intron Retention
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116861361-116861693:+
Coord C1 exon
chr8:116861361-116861507
Coord A exon
chr8:116861508-116861586
Coord C2 exon
chr8:116861587-116861693
Length
79 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TACCCTCATTCCCTCTAAAGACC
3' ss Score
6.64
Exon sequences
Seq C1 exon
CCATGATCCTCTCACAGGATATGAGGTATGGTTGGGTACAATTAACCAGAACCCACAGCCTGGAGAAGCAAACCTGCAGAGGGTCTCAGTGGCCAAGACAGTGTGCGGACCTGCAGGCTCCCAACTTGTTCTGCTCAAGCTGGAGAG
Seq A exon
GTATGTGGACAAGTTGAGAGGGTGTGAGGCAGGGCTGGCCTGTGGTCTTAGGCCCTGAATACCCTCATTCCCTCTAAAG
Seq C2 exon
ACCTGTGATCCTGAACCATCACGTGGCCAGGATTTGCCTACCTCCTGAACAGTATGTGGTACCTCCAGGGACCAACTGCGAGATCGCTGGCTGGGGTGAATCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680:ENSRNOT00000026711:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(16.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCAGTGGCCAAGACAGTG
R:
CTTTGGATTCACCCCAGCCAG
Band lengths:
172-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]