GgaINT0020672 @ galGal3
Intron Retention
Gene
ENSGALG00000002722 | E1C8A1_CHICK
Description
NA
Coordinates
chr12:2309805-2310138:+
Coord C1 exon
chr12:2309805-2309951
Coord A exon
chr12:2309952-2310031
Coord C2 exon
chr12:2310032-2310138
Length
80 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
GCTGTTCCATCCCTCTGCAGGCC
3' ss Score
11.2
Exon sequences
Seq C1 exon
TGATGCGGACCTGTCAGGCTATGAGGTGCACCTGGGGACGCTGTTCAAGGACCCCAGCCCCACCGACCCTGACCTGCAGGCCATCCCGATTGTACGCATCATCTGTGGCCCTTCTGAGTCCCACTTGGTGCTGCTGAAGCTGGCGTG
Seq A exon
GTGAGCGTCTGCACTTGGTGCCCTGTGCCCCAGTGCCATGGGCTGGCACCACGTCCCCATGCTGTTCCATCCCTCTGCAG
Seq C2 exon
GCCAGCTGTGCTGAACAAGCGCGTGGCCCTGATCTGCCTGCCGCCCGAGCGCTACATTGTGCCTGCTGGCACCACCTGTGAGATTGCTGGCTTTGGGGAAACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722:ENSGALT00000004292:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(26.5=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCCCGATTGTACGCATCA
R:
TTCCCCAAAGCCAGCAATCTC
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]