BtaINT0095641 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51084756-51085089:+
Coord C1 exon
chr22:51084756-51084902
Coord A exon
chr22:51084903-51084982
Coord C2 exon
chr22:51084983-51085089
Length
80 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
AGCCCTCATTCTCGCTCAAGACC
3' ss Score
2.96
Exon sequences
Seq C1 exon
CCATATGTCTCTCGTGGGCTATGAGGTGTGGCTGGGCACCCTGTTCCAGGACCCACAGCCTGGGGAGCCAGACCTGCAGCACATCCCAATGGCCAAGATGGTCTGTGGGCCCTCTGGTTCCCAGCTTGTTCTGCTCAAGTTGGAGAG
Seq A exon
GTGTGTGAGAACTCAAGAGGGTGTGAGGTGGGGTTGGGCCTTGTGGCCTCAGACCCTGAAAGCCCTCATTCTCGCTCAAG
Seq C2 exon
ACCCGTGATCCTGAACCAGCGTGTGGCCCTGATCTGCCTGCCCCCTGAGCGGTATGTGGTGCCTCCAGGCACCAGGTGTGAGATTGCAGGCTGGGGTGAGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585:ENSBTAT00000030663:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(16.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCTCGTGGGCTATGAGG
R:
CACACGCTGGTTCAGGATCAC
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]