MmuEX6068817 @ mm10
Exon Skipping
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:108084061-108084632:+
Coord C1 exon
chr9:108084061-108084207
Coord A exon
chr9:108084288-108084394
Coord C2 exon
chr9:108084493-108084632
Length
107 bp
Sequences
Splice sites
3' ss Seq
AACCCTCATTCCCACTAAAGACC
3' ss Score
3.12
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
CCACGAACCTCTCACAGGATACGAGGTATGGTTGGGTACAATTAACCAGAACCCACAGCCTGGAGAGGCAAACCTGCAGAGGGTCCCAGTGGCCAAGGCAGTGTGCGGCCCTGCAGGCTCCCAGCTTGTTCTGCTCAAGCTGGAGAG
Seq A exon
ACCTGTGATCCTGAACCATCACGTGGCCCTGATTTGCCTGCCTCCTGAACAGTATGTGGTACCTCCAGGGACCAAGTGTGAGATCGCAGGCTGGGGTGAATCCATCG
Seq C2 exon
GTACAAGCAATAACACAGTCCTTCATGTGGCCTCGATGAATGTCATCTCCAACCAGGAATGTAACACGAAGTACCGAGGACACATACAAGAGAGTGAGATATGCACCCAGGGACTGGTGGTCCCTGTGGGGGCTTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591-'20-25,'20-21,23-25=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.2=100)
A:
PF0008921=Trypsin=FE(16.3=100)
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATACGAGGTATGGTTGGGT
R:
TCCCTGGGTGCATATCTCACT
Band lengths:
245-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types