BtaEX6095366 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51084756-51085328:+
Coord C1 exon
chr22:51084756-51084902
Coord A exon
chr22:51084983-51085089
Coord C2 exon
chr22:51085189-51085328
Length
107 bp
Sequences
Splice sites
3' ss Seq
AGCCCTCATTCTCGCTCAAGACC
3' ss Score
2.96
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CCATATGTCTCTCGTGGGCTATGAGGTGTGGCTGGGCACCCTGTTCCAGGACCCACAGCCTGGGGAGCCAGACCTGCAGCACATCCCAATGGCCAAGATGGTCTGTGGGCCCTCTGGTTCCCAGCTTGTTCTGCTCAAGTTGGAGAG
Seq A exon
ACCCGTGATCCTGAACCAGCGTGTGGCCCTGATCTGCCTGCCCCCTGAGCGGTATGTGGTGCCTCCAGGCACCAGGTGTGAGATTGCAGGCTGGGGTGAGACCAAAG
Seq C2 exon
GTACAGGGGATGACACGGTCCTGAACATAGCCCTCCTGAGTGTCATCTCCAACCAGGAATGTAATGTCAAGCACCGAGGACGCGTACGGGAGAGTGAGATGTGTACTGCAGGACTGCTGGCCCCAGTGGGAGCCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585-'19-26,'19-24,20-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.2=100)
A:
PF0008921=Trypsin=FE(16.3=100)
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCGTGGGCTATGAGGTG
R:
ACATCTCACTCTCCCGTACGC
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]