RnoEX6037589 @ rn6
Exon Skipping
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116861361-116861924:+
Coord C1 exon
chr8:116861361-116861507
Coord A exon
chr8:116861587-116861693
Coord C2 exon
chr8:116861785-116861924
Length
107 bp
Sequences
Splice sites
3' ss Seq
TACCCTCATTCCCTCTAAAGACC
3' ss Score
6.64
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CCATGATCCTCTCACAGGATATGAGGTATGGTTGGGTACAATTAACCAGAACCCACAGCCTGGAGAAGCAAACCTGCAGAGGGTCTCAGTGGCCAAGACAGTGTGCGGACCTGCAGGCTCCCAACTTGTTCTGCTCAAGCTGGAGAG
Seq A exon
ACCTGTGATCCTGAACCATCACGTGGCCAGGATTTGCCTACCTCCTGAACAGTATGTGGTACCTCCAGGGACCAACTGCGAGATCGCTGGCTGGGGTGAATCCAAAG
Seq C2 exon
GTACAAGCAATAGCACAGTCCTTCATGTGGCCAAAATGAAGGTCATCTCCAGTCAGGAATGTAATGTGAAGTACCGGAGACGAGTACAAGAGAGTGAGATATGCACCGAGGGGTTGCTGGCCCCTACGGGCGCTTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680-'25-22,'25-19,26-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.2=100)
A:
PF0008921=Trypsin=FE(16.3=100)
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGATATGAGGTATGGTTGGGT
R:
AACCCCTCGGTGCATATCTCA
Band lengths:
249-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]