GgaEX0003461 @ galGal4
Exon Skipping
Gene
ENSGALG00000002722 | MST1
Description
hepatocyte growth factor-like protein precursor [Source:RefSeq peptide;Acc:NP_990544]
Coordinates
chr12:2482410-2483195:+
Coord C1 exon
chr12:2482410-2482556
Coord A exon
chr12:2482637-2482743
Coord C2 exon
chr12:2483056-2483195
Length
107 bp
Sequences
Splice sites
3' ss Seq
GCTGTTCCATCCCTCTGCAGGCC
3' ss Score
11.2
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
TGATGCGGACCTGTCAGGCTATGAGGTGCACCTGGGGACGCTGTTCAAGGACCCCAGCCCCACCGACCCTGACCTGCAGGCCATCCCGATTGTACGCATCATCTGTGGCCCTTCTGAGTCCCACTTGGTGCTGCTGAAGCTGGCGTG
Seq A exon
GCCAGCTGTGCTGAACAAGCGCGTGGCCCTGATCTGCCTGCCGCCCGAGCGCTACATTGTGCCTGCTGGCACCACCTGTGAGATTGCTGGCTTTGGGGAAACCAGAG
Seq C2 exon
GCACAGCGGATGGCCATGTGCTGAATGTGGCAAAGCTGCCAGTGATGGCACATGCTGAGTGCCAGGCAGCACTGCGTGGGCGCCTGAAGGAGAGCGAGCTGTGCACAGCCCCGCTGCGTGCTGGTGTGGGTGCCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722-'20-22,'20-20,22-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.2=100)
A:
PF0008921=Trypsin=FE(16.3=100)
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTGTCAGGCTATGAGGT
R:
CACAGCTCGCTCTCCTTCAG
Band lengths:
244-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]