GgaEX0003461 @ galGal3
Exon Skipping
Gene
ENSGALG00000002722 | E1C8A1_CHICK
Description
NA
Coordinates
chr12:2309805-2310590:+
Coord C1 exon
chr12:2309805-2309951
Coord A exon
chr12:2310032-2310138
Coord C2 exon
chr12:2310451-2310590
Length
107 bp
Sequences
Splice sites
3' ss Seq
GCTGTTCCATCCCTCTGCAGGCC
3' ss Score
11.2
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
TGATGCGGACCTGTCAGGCTATGAGGTGCACCTGGGGACGCTGTTCAAGGACCCCAGCCCCACCGACCCTGACCTGCAGGCCATCCCGATTGTACGCATCATCTGTGGCCCTTCTGAGTCCCACTTGGTGCTGCTGAAGCTGGCGTG
Seq A exon
GCCAGCTGTGCTGAACAAGCGCGTGGCCCTGATCTGCCTGCCGCCCGAGCGCTACATTGTGCCTGCTGGCACCACCTGTGAGATTGCTGGCTTTGGGGAAACCAGAG
Seq C2 exon
GCACAGCGGATGGCCATGTGCTGAATGTGGCAAAGCTGCCAGTGATGGCACATGCTGAGTGCCAGGCAGCACTGCGTGGGCGCCTGAAGGAGAGCGAGCTGTGCACAGCCCCGCTGCGTGCTGGTGTGGGTGCCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722-'13-13,'13-12,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(26.5=100)
A:
PF0008921=Trypsin=FE(19.5=100)
C2:
PF0008921=Trypsin=FE(24.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTGTCAGGCTATGAGGT
R:
CACAGCTCGCTCTCCTTCAG
Band lengths:
244-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]