DreEX6024404 @ danRer10
Exon Skipping
Gene
ENSDARG00000103308 | mst1
Description
macrophage stimulating 1 [Source:ZFIN;Acc:ZDB-GENE-020806-3]
Coordinates
chr6:53396732-53403710:-
Coord C1 exon
chr6:53403564-53403710
Coord A exon
chr6:53403367-53403473
Coord C2 exon
chr6:53396732-53396871
Length
107 bp
Sequences
Splice sites
3' ss Seq
GTGTTGCTCTCGTCCTGCAGTCC
3' ss Score
9.8
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
TTATGTGGACCTGACGGGATACACCGCTATGATGGGCACCTTGTTTCGTGACCCAAAAGAGGGAGAACCAGACCTACAGAGGATTTCTCTCACCAAAATCGTCTGCGGCCCTTCTGAATCCCACCTGGTCATGCTGCAGCTGGAGAC
Seq A exon
TCCTGCTCAGTTTAATGAGCGCGTGTCCCAGATCTGCCTTCCTCCCGAGCGCTACATCGTTCCTGATGGGACCATCTGTGAAATTGCTGGATGGGGAGAAACTAAAG
Seq C2 exon
GAAAGGGAGATGAAACGGTGCTGAATGTGGCTCAGATGCCGGTGCTCAGCAATAAGGACTGTAACCAGTACTTCAAGGGCCGCGTGCGTGAGAATGAGATGTGCACCATGGCATTCCAGGCTGGAGTGGGAGCCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103308-'19-22,'19-19,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.2=100)
A:
PF0008921=Trypsin=FE(16.3=100)
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATACACCGCTATGATGGGC
R:
GGAATGCCATGGTGCACATCT
Band lengths:
248-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]