HsaINT0105837 @ hg19
Intron Retention
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:7410]
Coordinates
chr14:105916395-105916661:+
Coord C1 exon
chr14:105916395-105916521
Coord A exon
chr14:105916522-105916597
Coord C2 exon
chr14:105916598-105916661
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
3' ss Seq
TGCCCGTCCTTCTCTTCCAGGGG
3' ss Score
12.66
Exon sequences
Seq C1 exon
GGGAAATAGAAGAGGAAATGGAGAACCCGGAAATGGTGGACCTGCCCGAGAAACTAAAGCACCAGCTGCGGCATCGGGAGCTGTTCCTCTCCCGGCAGCTGGAGTCTCTGCCCGCCACGCACATCAG
Seq A exon
GTAGCCCCCAGCAGCTCCCGCCCTGGGCCCCTCGGGCTGCCCTCGCCTTTCCAGCCTGCCCGTCCTTCTCTTCCAG
Seq C2 exon
GGGCAAGTGCAGCGTCACCCTGCTCAACGAGACCGAGTCGCTCAAGTCCTACCTGGAGCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979-MTA1:NM_004689:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.787 A=NA C2=0.345
Domain overlap (PFAM):
C1:
PF0142613=BAH=PU(46.2=97.3)
A:
NA
C2:
PF0142613=BAH=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAAATGGAGAACCCGGA
R:
CTCCAGGTAGGACTTGAGCGA
Band lengths:
175-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)