MmuINT0101426 @ mm9
Intron Retention
Gene
ENSMUSG00000021144 | Mta1
Description
metastasis associated 1 [Source:MGI Symbol;Acc:MGI:2150037]
Coordinates
chr12:114359038-114359297:+
Coord C1 exon
chr12:114359038-114359164
Coord A exon
chr12:114359165-114359233
Coord C2 exon
chr12:114359234-114359297
Length
69 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
3' ss Seq
CTACCCACTCTCTCTTCCAGGGG
3' ss Score
11.03
Exon sequences
Seq C1 exon
GGGAAGTGGAGGAGGAGGTAGAAAACCCAGAGATGGTGGACCTGCCTGAGAAACTTAAGCATCAGCTGCGGCATCGAGAACTGTTCCTGTCTCGGCAGTTGGAGTCTCTGCCTGCCACCCACATCAG
Seq A exon
GTAGTTCTCACAGCCCTACCTGGCACCTGACTGCCTGCTCCTCCTCCACCTACCCACTCTCTCTTCCAG
Seq C2 exon
GGGCAAGTGCAGTGTTACCCTGCTCAATGAGACGGAGTCACTCAAGTCCTACTTGGAGCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021144-Mta1:NM_054081:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.572 A=NA C2=0.191
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(26.1=100)
A:
NA
C2:
PF0142613=BAH=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGTGGAGGAGGAGGTAG
R:
AGGACTTGAGTGACTCCGTCT
Band lengths:
177-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: