RnoINT0094966 @ rn6
Intron Retention
Gene
ENSRNOG00000004711 | Mta1
Description
metastasis associated 1 [Source:RGD Symbol;Acc:621018]
Coordinates
chr6:137932913-137933172:+
Coord C1 exon
chr6:137932913-137933039
Coord A exon
chr6:137933040-137933108
Coord C2 exon
chr6:137933109-137933172
Length
69 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
3' ss Seq
CTACCCATTCTCTCTTCCAGGGG
3' ss Score
11.27
Exon sequences
Seq C1 exon
GGGAAGTGGAGGAGGAGGTAGAAAACCCAGAGATGGTAGACCTGCCTGAGAAACTTAAGCACCAGCTGCGGCATCGGGAACTGTTCCTCTCTCGGCAGTTGGAGTCTCTGCCTGCCACCCACATCAG
Seq A exon
GTAGTTCTCGCAGCCCTACCTGGCACCGTGCTGCCTGCTCCTCCTCCACCTACCCATTCTCTCTTCCAG
Seq C2 exon
GGGCAAGTGCAGTGTTACCCTGCTCAATGAGACCGAGTCACTCAAGTCCTACCTGGAGCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004711:ENSRNOT00000006521:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(26.9=100)
A:
NA
C2:
PF0142613=BAH=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGAGATGGTAGACCTGC
R:
CTCACGCTCCAGGTAGGACTT
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]