HsaINT0105840 @ hg19
Intron Retention
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:7410]
Coordinates
chr14:105924607-105926794:+
Coord C1 exon
chr14:105924607-105924709
Coord A exon
chr14:105924710-105926694
Coord C2 exon
chr14:105926695-105926794
Length
1985 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
AGCGCATCTCCTTTCCCCAGCTC
3' ss Score
6.82
Exon sequences
Seq C1 exon
GCGAGGAGGATGGCCGAGACCAGTCCAGGTTGGAGACCCAGGTGTGGGAGGCGCACAACCCACTCACAGACAAGCAGATCGACCAGTTCCTGGTGGTGGCCCG
Seq A exon
GTGAGTCCTGCTCCTGGGCAAGGCCAGCAGGGGTGGTGCCTGGAGCTTCTGTTCTCCCTTCCCTGTGGTGGGTGTTGGGGACGTGACAGTCTTGGATCCCATATCCCAACAAGAAGCCCATGCGCTGCAGCCCTGAGACCCCCGGTAGCAGTTCCCAGAGAGGCTCGGGAGTGCTGGGTCCAGGCCCTTCATTAAATAGAAGGGCGGCCCTTCTGGGGGGCAGGCCTGTGTGCCTGCCCATGTGTCCCTAATGGGGCTTTCCCAGGATGGGCCAGAGGTGCTTTCCCACTCCTGGGCCACTGGGAGCAAGTGGGCTGGGCCTGGTCATGGAGCAGAGCAGCTGCAGCCCGGGCAGACCCCTGGGGCAGGGCGAAGGCCGAGGCCCAGGAGAGGACCATGCACCTTCCCTGCCAGCAGCCTGGGAGGTGGAGAAAACCCCAAAAGAAGCCCCAAGGCGGCTGCCAATCTATCGGGATGCCCTCAGTTAGACGCACACGGGTTCTGGGGTGGGTGCCGGGCCCTACTCCGCAGCCTGGGGCCCAGGACACGAGGAGTCCTCGCCACCTGCGGGCTGCTCCCTGCGATGCTCATGCAGTCTGTCCCTGGTCCCTGGCGCCTGGGGAGCTGTGTGCCTGGGGGGAGTCCGCGCTGCCCGTGGCCCCTGGTCCCTGGTCCCTGGGGAGCTGTGTGCCTGGGGGGAGTCCGTGCTGCCCATGGCCCCTGGTCCCTGGCACCTGGGGAGCTGTGTGCCTGGGGGGAGTCCGCGCTGCCCGTGGCCCCTGGTCCCTGGTCCCTAGGGAGCTGTGTGCCTGGGGGGAGTCCGTGCTGCCCATGGCCCCTGGTCCCTGGCGCCTGGGGAGCTGTGTGCCTGGGGGCAGTCCGTGCTGCCCATGGCCCCTGGTCCCTGGTCCCTGGGGAGCTGTGTGCCTGGGGGGAGTCCGTGCTGCCCGTGGCCCCTGGTCCCTGGTCCCTGGGGAGCTGTGTGCCTGGGGGGAGTCCGTGCTGCCCATGGCCCCTGGTCCCTGGCGCCTGGGGAGCTGTGTGCCTGGGGGGAGTCCGTGCTGCCCATGGCCCCTGGTCCCTGGTCCCTGGGGAGCTGTGTGCCTGGGGGGAGTCCGTGCTGCCCGTGGCCCCTGGTCCCTGGCGCCTGGGGAGCTGTGTGCCTGGGGGCAGTCCGTGCTGCCCATGGCCCCTGGTCCCTGGCACCTGGGGAGCTGTGTGCCTGGGGGGAGTCCGCGCTGCCCGTGGCCCCTGGTCCCTGGTCCCTGGGGAGCTGTGTGCCTGGGGGGAGTCCGTGCTGCCCATGGCCCCTGGTCCCTGGCGCCTGGGGAGCTGTGTGCCTGGGGGCAGTCCGTGCTGCCCATGGCCCCTGGTCCCTGGTCCCTGGGGAGCTGTGTGCCTGGGGGGAGTCCGTGCTGCCCGTGGCCCCTGGTCCCTGGTCCCTGGGGAGCTGTGTGCCTGGGGGGAGTCCGTGCTGCCCATGGCCCCTGGTCCCTGGCGCCTGGGGAGCTGTGTGCCTGGGGGGAGTCCGTGCTGCCCGTGGCCCCTGGTCCCTGGCGCCTGGGGAGCTGTGTGCCTGGGGGAAGTCCGTGCTGCCCATGGCCCCTGGTCCCTGGCACCTGGGGAGCTGTGTGCCTGGGGGAAGTCCGTGCTGCCCATGGCCCCTGGTCCCTGGCACCTGGGGAGCGGTGTGCGTGGGGGAAGTCCGTGCTGCCCATGGCCCCTGGTCCCTGGCACCTGGGGAGCTGTGTGCCTGGGGGAAGTCCGTGCTGCCCATGGCCCCTGGTCCCTGGCACCTGGGGAGTGGTGTGCCTGGGGGAAGTCCGTGCTGCCCATGGCCCCTGGTCCCTGGCACCTGGGGAGTGGTGTGCCTTGGGGGAGTCCGTGCTGCCCGTGGCCGCTGGTCCCTGGCGCCTGGGGAGCGGTGTGCCTGTGGGGAGTCCCTGCTTGGCCGACACTGTGGTCAGCGCATCTCCTTTCCCCAG
Seq C2 exon
CTCTGTGGGCACCTTCGCACGGGCCCTGGACTGCAGCAGCTCCGTCCGACAGCCCAGCCTGCACATGAGCGCCGCAGCTGCCTCCCGAGACATCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979-MTA1:NM_004689:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.093 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0144819=ELM2=FE(61.8=100)
A:
NA
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATGGCCGAGACCAGTC
R:
CAGGGTGATGTCTCGGGAGG
Band lengths:
198-2183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)