MmuINT0101429 @ mm10
Intron Retention
Gene
ENSMUSG00000021144 | Mta1
Description
metastasis associated 1 [Source:MGI Symbol;Acc:MGI:2150037]
Coordinates
chr12:113126780-113127714:+
Coord C1 exon
chr12:113126780-113126877
Coord A exon
chr12:113126878-113127614
Coord C2 exon
chr12:113127615-113127714
Length
737 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
GTGGGTCTCCTTCTCCCCAGCTC
3' ss Score
7.78
Exon sequences
Seq C1 exon
GAGGACGGCCGCGATCAGTCAAAACTGGAGACCAAGGTGTGGGAAGCCCACAATCCACTTGTGGATAAGCAGATTGACCAGTTTCTGGTGGTGGCCCG
Seq A exon
GTAAGTTCAGTAAGCAGAGGCCAGCAGGATGTTGCCTGGAGCAGTGTGGTGGGTCTTGGGGACATGGAGCCTTAATTTGTACATCCAATATGGGGGTCCATGGTCTTATCCCTGTTTCTTGCTCAGACCTCTTCCTGAGTATGAATGCAGCCTTTTAAGGCTGCAGATGTCCCTGGAGTCCTGTGTCAAGTGCTCCTGGGCATCTTCTTCTCACTGTGTGCCCTAAGGGCTGTCTCCACCATGGGCAGGGGCTTCTTCCAGGGCTAGGCTAGGACTTAGCTAAAGAGCTCCTGGCTGGTTGAGTGGGAGGCTAGCGGCTGTTTGAATGAAGAAGATAGGGCCCCACAATCAGTGCTGAGCCCCCAGAGCAGTTGTGGCTCAGCAAATCCCAGCATGGCCTAGGAGGGACCTGTCTACATTTGCTACAGACAGTGAGGCTTAGTGTCCCAGGTCTGAGGCAGCTCCCAATGCAGTGACCTCCAGCAGACACACATGGATAGACAGACTTCTCTCAGCCAGCATTGAGTCATGTTTTGTATGTTGCGTGTCCTCTGATTCTTTCATACCTGGGGACTTGTGCCACCACGTGCATCTACAGCTACCTGAGCCCCTCCAGAGCTGAGCCCCAGAGACCCTTTGGTGGGTGTAGCACCTGGGTCCTGGCCCTCACTGACTGGCCTGGTGGAGCCCGTCCCTCCAGGTCAACTCCGGTGGTCAGTGGGTCTCCTTCTCCCCAG
Seq C2 exon
CTCTGTGGGTACCTTTGCACGGGCCCTGGATTGCAGCAGCTCCGTGCGGCAGCCTAGCCTGCACATGAGTGCCGCAGCGGCCTCCCGAGACATCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021144:ENSMUST00000009099:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.165 A=NA C2=0.230
Domain overlap (PFAM):
C1:
PF0144819=ELM2=FE(58.2=100)
A:
NA
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACGGCCGCGATCAG
R:
CAGGGTGATGTCTCGGGAGG
Band lengths:
198-935
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types