RnoINT0094969 @ rn6
Intron Retention
Gene
ENSRNOG00000004711 | Mta1
Description
metastasis associated 1 [Source:RGD Symbol;Acc:621018]
Coordinates
chr6:137939014-137940076:+
Coord C1 exon
chr6:137939014-137939116
Coord A exon
chr6:137939117-137939976
Coord C2 exon
chr6:137939977-137940076
Length
860 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
GTGGATCTCCTTCTCCCTAGCTC
3' ss Score
7.14
Exon sequences
Seq C1 exon
GTGAGGAGGACGGCCGCGATCAGTCGAAGCTGGAGACCAAGGTGTGGGAAGCCCACAATCCACTTGTAGATAAGCAGATTGACCAGTTTCTGGTGGTGGCCCG
Seq A exon
GTGAGTCCAGTAATCAGGGGCCAGCAGGATGTTGCCTGGAGCAGTGTGGTGGGTCTTGGGGACATGGAGCCTTAATTTGTACATCCAGTATGGGGTCCATGGTCTTATCCTTGTTTTTTCTTCTTCTTTTTTTTTTTTTGGAAGCTGGGGACCGAACCCAGGGCCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCTTTTTCCTTGTTTCTTGCTCAGACCTTTTCCTGAGTATGAATGCAGCCTGACAATGTCTGGGCTCCTGTGATAAGTGTTCCTAGGCATCTGGGCCTATATTCTCACTGTGTGTGCCCTGAGGGCTGTCCATCATAGGCAGGTGTTCCTCCCAGGGCTAGGCTAGGACCTGGCTAAAGAGCTCCTGGCTGGCTGAATGGGAGGCCCAAGGCTGCTTGAACAAAGGGGATAGGCCCTGAAGGCCCAGAATCAGCACTGAGCCTCCAGAGCAGTTGAGGCTCAGCCGATCCAGCATGGCCCAGGAGGGCCTGCCTGCCTTTGCTACGGACAGTGAGGCTTAGGGTTCCCAGGTCTGACGCAGTTCCCCATGTAGAGATCTCCAGCAGACACACATGGGTGGATAAGAGAATTCTCTCAACCAGCATTGAGGTATATTTTGTATATTGCTTGCCCCCTGATTGATTTACACACGGGGACTCATGCCACCAAGATGCAGCTACAGCTTCTACCTGTGCTCCTCTAGAACTGAGCCCCAGAGACCCTTTGGTGCATGTACCACCTGGGTCCTGGCCCTCACTAACTTGCTGGTGGAGGTCATCCCTCCAGGTCAGCTCTGGTGGTTAGTTTAGTGGATCTCCTTCTCCCTAG
Seq C2 exon
CTCTGTGGGTACCTTTGCACGGGCCCTGGATTGCAGCAGCTCCGTGCGGCAGCCTAGCCTGCACATGAGTGCCGCCGCAGCCTCCCGAGACATCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004711:ENSRNOT00000006521:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0144819=ELM2=FE(61.8=100)
A:
NA
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACGGCCGCGATCAG
R:
CAGGGTGATGTCTCGGGAGG
Band lengths:
198-1058
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]