MmuINT0101429 @ mm9
Intron Retention
Gene
ENSMUSG00000021144 | Mta1
Description
metastasis associated 1 [Source:MGI Symbol;Acc:MGI:2150037]
Coordinates
chr12:114364986-114365925:+
Coord C1 exon
chr12:114364986-114365088
Coord A exon
chr12:114365089-114365825
Coord C2 exon
chr12:114365826-114365925
Length
737 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
GTGGGTCTCCTTCTCCCCAGCTC
3' ss Score
7.78
Exon sequences
Seq C1 exon
GTGAGGAGGACGGCCGCGATCAGTCAAAACTGGAGACCAAGGTGTGGGAAGCCCACAATCCACTTGTGGATAAGCAGATTGACCAGTTTCTGGTGGTGGCCCG
Seq A exon
GTAAGTTCAGTAAGCAGAGGCCAGCAGGATGTTGCCTGGAGCAGTGTGGTGGGTCTTGGGGACATGGAGCCTTAATTTGTACATCCAATATGGGGGTCCATGGTCTTATCCCTGTTTCTTGCTCAGACCTCTTCCTGAGTATGAATGCAGCCTTTTAAGGCTGCAGATGTCCCTGGAGTCCTGTGTCAAGTGCTCCTGGGCATCTTCTTCTCACTGTGTGCCCTAAGGGCTGTCTCCACCATGGGCAGGGGCTTCTTCCAGGGCTAGGCTAGGACTTAGCTAAAGAGCTCCTGGCTGGTTGAGTGGGAGGCTAGCGGCTGTTTGAATGAAGAAGATAGGGCCCCACAATCAGTGCTGAGCCCCCAGAGCAGTTGTGGCTCAGCAAATCCCAGCATGGCCTAGGAGGGACCTGTCTACATTTGCTACAGACAGTGAGGCTTAGTGTCCCAGGTCTGAGGCAGCTCCCAATGCAGTGACCTCCAGCAGACACACATGGATAGACAGACTTCTCTCAGCCAGCATTGAGTCATGTTTTGTATGTTGCGTGTCCTCTGATTCTTTCATACCTGGGGACTTGTGCCACCACGTGCATCTACAGCTACCTGAGCCCCTCCAGAGCTGAGCCCCAGAGACCCTTTGGTGGGTGTAGCACCTGGGTCCTGGCCCTCACTGACTGGCCTGGTGGAGCCCGTCCCTCCAGGTCAACTCCGGTGGTCAGTGGGTCTCCTTCTCCCCAG
Seq C2 exon
CTCTGTGGGTACCTTTGCACGGGCCCTGGATTGCAGCAGCTCCGTGCGGCAGCCTAGCCTGCACATGAGTGCCGCAGCGGCCTCCCGAGACATCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021144-Mta1:NM_054081:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.039 A=NA C2=0.418
Domain overlap (PFAM):
C1:
PF0144819=ELM2=FE(61.8=100)
A:
NA
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACGGCCGCGATCAG
R:
CAGGGTGATGTCTCGGGAGG
Band lengths:
198-935
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: